Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015246A_C01 KMC015246A_c01
(588 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA34702.1| homolog to plastid-lipid-associated protein [Cit... 185 4e-46
pir||T10179 fibrillin-like protein CHRC, chromoplast - cucumber ... 182 4e-45
sp|O99019|LIPC_SOLDE Light-induced protein, chloroplast precurso... 173 2e-42
sp|P80471|LIPC_SOLTU Light-induced protein, chloroplast precurso... 172 3e-42
pir||S56633 plant fibrillin precursor - pepper gi|460761|emb|CAA... 169 2e-41
>dbj|BAA34702.1| homolog to plastid-lipid-associated protein [Citrus unshiu]
Length = 323
Score = 185 bits (469), Expect = 4e-46
Identities = 110/188 (58%), Positives = 122/188 (64%), Gaps = 11/188 (5%)
Frame = +1
Query: 58 MTSISHLNQLTSRTLPATP----LISTASIFPPSTVGIRSKPVGTPRISAH---IPRPVV 216
M SIS NQ +TL P S SI P ++V I +S RP+V
Sbjct: 1 MASISQTNQFPCKTLSQNPPHNQFTSKPSILPLNSVRISRSLAKKSFLSIQGFTRARPLV 60
Query: 217 IARAKTSDDEWGPEPSS----LAAVTEVEEKPVETETETLKKALVDSFYGTDRGLKATSD 384
+ RA DDEWGPE AV E E TE + LKKALVDSFYGTDRGL ATS+
Sbjct: 61 LTRA-ADDDEWGPEKEKEGGGALAVAEEESPKEVTEIDNLKKALVDSFYGTDRGLNATSE 119
Query: 385 TRAVIVELITQLEAKNPTAAPTDALTLLNGKWILAYTSFAGLYPLLSRGTFSLVKVEEIS 564
TRA IVELITQLEAKNPT APT+ALTLLN KWIL YTSF+GL+PLLSRGT L +VEEIS
Sbjct: 120 TRAEIVELITQLEAKNPTPAPTEALTLLNAKWILVYTSFSGLFPLLSRGTLPLARVEEIS 179
Query: 565 QTIDSENF 588
QTIDSENF
Sbjct: 180 QTIDSENF 187
>pir||T10179 fibrillin-like protein CHRC, chromoplast - cucumber
gi|1523992|emb|CAA64846.1| chromoplast-specific
carotenoid-associated protein, CHRC [Cucumis sativus]
gi|4138857|gb|AAD05165.1| chromoplast-specific
carotenoid-associated protein CHRC [Cucumis sativus]
Length = 322
Score = 182 bits (461), Expect = 4e-45
Identities = 109/189 (57%), Positives = 129/189 (67%), Gaps = 13/189 (6%)
Frame = +1
Query: 58 MTSISHLNQLTSRTLPATP----LISTASIFPPSTVGIRSKPV-GTPRISAHIPRPVVIA 222
M +S NQL +TL P L S S+FP +++G ++ G IS RP
Sbjct: 1 MAFVSQFNQLPCKTLALNPPQPQLTSKPSVFPIASIGATARAAAGKSLISV---RPAFKV 57
Query: 223 RAKTSDDEWGPEP-------SSLAAVTEVEEKPVE-TETETLKKALVDSFYGTDRGLKAT 378
RA +DDEWG + SS+A + EEKP+E +E LKKALVDSFYGTDRGL+ +
Sbjct: 58 RAVLNDDEWGEDKDEKYGDDSSVAVAEKEEEKPLEPSEIYKLKKALVDSFYGTDRGLRVS 117
Query: 379 SDTRAVIVELITQLEAKNPTAAPTDALTLLNGKWILAYTSFAGLYPLLSRGTFSLVKVEE 558
DTRA IVELITQLE+KNPT APT+ALTLLNGKWILAYT+FAGL+PLLSR LVKVEE
Sbjct: 118 RDTRAEIVELITQLESKNPTPAPTEALTLLNGKWILAYTTFAGLFPLLSR-NLPLVKVEE 176
Query: 559 ISQTIDSEN 585
ISQTIDSEN
Sbjct: 177 ISQTIDSEN 185
>sp|O99019|LIPC_SOLDE Light-induced protein, chloroplast precursor (C40.4)
gi|4007750|emb|CAA10372.1| fibrillin [Solanum demissum]
Length = 326
Score = 173 bits (438), Expect = 2e-42
Identities = 106/190 (55%), Positives = 124/190 (64%), Gaps = 13/190 (6%)
Frame = +1
Query: 58 MTSISHLNQLTSRTLPATPLISTA----SIFPPSTVGIRSKPVGTPRISAHI---PRPVV 216
M SIS LNQ+ +TL T S S P S+ SK IS P+P
Sbjct: 1 MASISSLNQIPCKTLQITSQYSKPTSKISTLPISSTNFLSKTEQHRSISVKEFTNPKPKF 60
Query: 217 IARAKTSD--DEWGPEPSSL--AAVTEVEEKPVE--TETETLKKALVDSFYGTDRGLKAT 378
A+A D DEWGPE + V VEE+P + +E E LKK L DS YGT+RGL A+
Sbjct: 61 TAQATNYDKEDEWGPEVEQIRPGGVAVVEEEPPKEPSEIELLKKQLADSLYGTNRGLSAS 120
Query: 379 SDTRAVIVELITQLEAKNPTAAPTDALTLLNGKWILAYTSFAGLYPLLSRGTFSLVKVEE 558
S+TRA IVELITQLE+KNP APT+ALTLLNGKWILAYTSF+GL+PLLSRG LV+VEE
Sbjct: 121 SETRAEIVELITQLESKNPNPAPTEALTLLNGKWILAYTSFSGLFPLLSRGNLPLVRVEE 180
Query: 559 ISQTIDSENF 588
ISQTIDSE+F
Sbjct: 181 ISQTIDSESF 190
>sp|P80471|LIPC_SOLTU Light-induced protein, chloroplast precursor (Chloroplastic
drought-induced stress protein CDSP-34)
gi|7489242|pir||T07825 fibrillin homolog CDSP34
precursor, chloroplast - potato
gi|2598049|emb|CAA75558.1| chloroplast drought-induced
stress protein, 34 kD) [Solanum tuberosum]
Length = 326
Score = 172 bits (436), Expect = 3e-42
Identities = 106/190 (55%), Positives = 124/190 (64%), Gaps = 13/190 (6%)
Frame = +1
Query: 58 MTSISHLNQLTSRTLPATPLISTA----SIFPPSTVGIRSKPVGTPRISAHI---PRPVV 216
M SIS LNQ+ +TL T S S P S+ SK IS P+P
Sbjct: 1 MASISSLNQIPCKTLQITSQYSKPTSKISTLPISSTNFPSKTELHRSISVKEFTNPKPKF 60
Query: 217 IARAKTSD--DEWGPEPSSL--AAVTEVEEKPVE--TETETLKKALVDSFYGTDRGLKAT 378
A+A D DEWGPE + V VEE+P + +E E LKK L DS YGT+RGL A+
Sbjct: 61 TAQATNYDKEDEWGPEVEQIRPGGVAVVEEEPPKEPSEIELLKKQLADSLYGTNRGLSAS 120
Query: 379 SDTRAVIVELITQLEAKNPTAAPTDALTLLNGKWILAYTSFAGLYPLLSRGTFSLVKVEE 558
S+TRA IVELITQLE+KNP APT+ALTLLNGKWILAYTSF+GL+PLLSRG LV+VEE
Sbjct: 121 SETRAEIVELITQLESKNPNPAPTEALTLLNGKWILAYTSFSGLFPLLSRGNLPLVRVEE 180
Query: 559 ISQTIDSENF 588
ISQTIDSE+F
Sbjct: 181 ISQTIDSESF 190
>pir||S56633 plant fibrillin precursor - pepper gi|460761|emb|CAA50750.1|
fibrillin [Capsicum annuum] gi|1279231|emb|CAA65784.1|
plastoglobules associated protein [Capsicum annuum]
gi|1296480|emb|CAA66160.1| plastoglobules associated
protein [Capsicum annuum] gi|4006974|emb|CAA10373.1|
plastid-lipid-associated protein [Capsicum annuum]
Length = 322
Score = 169 bits (429), Expect = 2e-41
Identities = 102/184 (55%), Positives = 123/184 (66%), Gaps = 9/184 (4%)
Frame = +1
Query: 58 MTSISHLNQLTSRTLPATPLISTASIFPPSTVGIRSKPVGTPRISAHI---PRPVVIARA 228
M SIS LNQ+ +TL T S S P ++ SK IS P+P A+A
Sbjct: 1 MASISSLNQIPCKTLQITSQYSKISSLPLTSPNFPSKTELHRSISIKEFTNPKPKFTAQA 60
Query: 229 KTSD--DEWGPEPSSL--AAVTEVEEKPVE--TETETLKKALVDSFYGTDRGLKATSDTR 390
D DEWGPE + V VEE+P + +E E LKK L DSFYGT+RGL A+S+TR
Sbjct: 61 TNYDKEDEWGPELEQINPGGVAVVEEEPPKEPSEMEKLKKQLTDSFYGTNRGLSASSETR 120
Query: 391 AVIVELITQLEAKNPTAAPTDALTLLNGKWILAYTSFAGLYPLLSRGTFSLVKVEEISQT 570
A IVELITQLE+KNPT APT+AL+LLNGKWILAYTSF+GL+PLL+RG V+VEEISQT
Sbjct: 121 AEIVELITQLESKNPTPAPTEALSLLNGKWILAYTSFSGLFPLLARGNLLPVRVEEISQT 180
Query: 571 IDSE 582
ID+E
Sbjct: 181 IDAE 184
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.311 0.128 0.359
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 596,701,077
Number of Sequences: 1393205
Number of extensions: 15937667
Number of successful extensions: 103888
Number of sequences better than 10.0: 528
Number of HSP's better than 10.0 without gapping: 58675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90919
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
