Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015238A_C01 KMC015238A_c01
(565 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM63181.1| unknown [Arabidopsis thaliana] 117 1e-25
ref|NP_565031.1| expressed protein; protein id: At1g72020.1, sup... 117 1e-25
gb|EAA09829.1| agCP9193 [Anopheles gambiae str. PEST] 34 1.4
pir||T25858 hypothetical protein T04C9.4 - Caenorhabditis elegans 34 1.4
ref|NP_705239.1| hypothetical protein [Plasmodium falciparum 3D7... 32 4.2
>gb|AAM63181.1| unknown [Arabidopsis thaliana]
Length = 97
Score = 117 bits (292), Expect = 1e-25
Identities = 55/74 (74%), Positives = 64/74 (86%), Gaps = 1/74 (1%)
Frame = -2
Query: 564 SVSRGFHSTGMKRM-GGGHGHDEPYYMHAKHMYNLDRMKYQGLKMSLAVFTAFSIGVAVP 388
SV+R FHSTG+K+M GGGHG + YY+HAKHMYNLDRMKYQ LKMSL VFTAFSIGV VP
Sbjct: 24 SVTRSFHSTGVKKMSGGGHGGYDEYYLHAKHMYNLDRMKYQALKMSLGVFTAFSIGVGVP 83
Query: 387 VYAVIFQPKKTASG 346
++AV+FQ +KT SG
Sbjct: 84 IFAVVFQQRKTQSG 97
>ref|NP_565031.1| expressed protein; protein id: At1g72020.1, supported by cDNA:
2031., supported by cDNA: gi_18253028 [Arabidopsis
thaliana] gi|25406136|pir||C96743 unknown protein
[imported] - Arabidopsis thaliana
gi|12322207|gb|AAG51143.1|AC069273_14 unknown protein
[Arabidopsis thaliana] gi|18253029|gb|AAL62441.1|
unknown protein [Arabidopsis thaliana]
gi|22136474|gb|AAM91315.1| unknown protein [Arabidopsis
thaliana]
Length = 97
Score = 117 bits (292), Expect = 1e-25
Identities = 55/74 (74%), Positives = 64/74 (86%), Gaps = 1/74 (1%)
Frame = -2
Query: 564 SVSRGFHSTGMKRM-GGGHGHDEPYYMHAKHMYNLDRMKYQGLKMSLAVFTAFSIGVAVP 388
SV+R FHSTG+K+M GGGHG + YY+HAKHMYNLDRMKYQ LKMSL VFTAFSIGV VP
Sbjct: 24 SVTRSFHSTGVKKMSGGGHGGYDEYYLHAKHMYNLDRMKYQALKMSLGVFTAFSIGVGVP 83
Query: 387 VYAVIFQPKKTASG 346
++AV+FQ +KT SG
Sbjct: 84 IFAVVFQQRKTQSG 97
>gb|EAA09829.1| agCP9193 [Anopheles gambiae str. PEST]
Length = 1736
Score = 33.9 bits (76), Expect = 1.4
Identities = 24/101 (23%), Positives = 44/101 (42%), Gaps = 4/101 (3%)
Frame = +1
Query: 133 QCIELLMNLMKNQESKY---LEVRGIDYYKRYMENPYRGLNMNKVQNNNNHQTNMLV*DP 303
+ +E L +++ S + L V I+Y+ R+ME + N V + + H+T + +
Sbjct: 1178 EIVEKLPPILRRDWSHHRLRLGVPTIEYFSRWMETELEAASYNSVPSFDEHRTEVTTSEN 1237
Query: 304 QIHLIVEYEGKDELARSCLLWLENDCIDRN-CNTNAESSEH 423
+ H + + L R CL + C +R C N H
Sbjct: 1238 RKHQRWDIVKEHRLCRKCLRSHDTICPERRLCGRNGCGLSH 1278
>pir||T25858 hypothetical protein T04C9.4 - Caenorhabditis elegans
Length = 149
Score = 33.9 bits (76), Expect = 1.4
Identities = 19/79 (24%), Positives = 34/79 (42%)
Frame = -1
Query: 442 VENVPCCVHCFQHWCCSSCLCSHFPAKEDSFWLAHLFLHIQQ*GGFGDPRLAYWFDGYYC 263
++++ CC H Q +C C C + K F + L + FG+ + C
Sbjct: 70 LDSMSCCEHQAQLFC-KQCHCRRYGPKGIGFGIGAGSLTMDTGEQFGNTEVDMTLVNVSC 128
Query: 262 FELCSCLTLYMDFPYISCN 206
F+ C C+ + + P I C+
Sbjct: 129 FKTCLCVLITLIPPQIPCS 147
>ref|NP_705239.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23615484|emb|CAD52475.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1335
Score = 32.3 bits (72), Expect = 4.2
Identities = 28/95 (29%), Positives = 43/95 (44%), Gaps = 3/95 (3%)
Frame = +1
Query: 148 LMNLMKNQESKYLEVRGIDYYKRYMENPYRGLNMN-KVQNNNNHQTN--MLV*DPQIHLI 318
L N+ KN+E K +Y Y++N G+N N V NN + TN M + HL+
Sbjct: 188 LFNIYKNEEGKIYNCFD-KFYDTYIKNNKYGMNHNYGVNNNIEYITNKRMRLSTDIDHLV 246
Query: 319 VEYEGKDELARSCLLWLENDCIDRNCNTNAESSEH 423
+Y+ + EN ID N N N + ++
Sbjct: 247 DQYDER-----------ENITIDNNNNDNKNNDDN 270
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 496,581,048
Number of Sequences: 1393205
Number of extensions: 11041449
Number of successful extensions: 39857
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 34494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39176
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
