Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015188A_C01 KMC015188A_c01
(510 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q40194|R11D_LOTJA Ras-related protein Rab11D gi|1370148|emb|C... 125 4e-28
pir||T06448 GTP-binding protein - garden pea gi|303746|dbj|BAA02... 108 3e-23
gb|AAN03473.1| small GTP-binding protein [Glycine max] 105 2e-22
sp|Q40195|R11E_LOTJA Ras-related protein Rab11E gi|1370150|emb|C... 104 7e-22
emb|CAB65172.1| Rab11 GTPase [Lycopersicon esculentum] 100 1e-20
>sp|Q40194|R11D_LOTJA Ras-related protein Rab11D gi|1370148|emb|CAA98180.1| RAB11D [Lotus
japonicus]
Length = 218
Score = 125 bits (313), Expect = 4e-28
Identities = 63/66 (95%), Positives = 66/66 (99%)
Frame = -1
Query: 510 METSALEATHVENAFTEVLTQIYRIVSQRAVEAGDSGSSSGLPSQGQTINVKEDSSVLKR 331
METSALEAT+VENAFTEVLTQIYRIVS+RAVEAGDSGSSSGLPS+GQTINVKEDSSVLKR
Sbjct: 153 METSALEATNVENAFTEVLTQIYRIVSKRAVEAGDSGSSSGLPSKGQTINVKEDSSVLKR 212
Query: 330 FGCCST 313
FGCCST
Sbjct: 213 FGCCST 218
>pir||T06448 GTP-binding protein - garden pea gi|303746|dbj|BAA02114.1|
GTP-binding protein [Pisum sativum]
gi|738938|prf||2001457F GTP-binding protein
Length = 218
Score = 108 bits (271), Expect = 3e-23
Identities = 54/65 (83%), Positives = 61/65 (93%)
Frame = -1
Query: 510 METSALEATHVENAFTEVLTQIYRIVSQRAVEAGDSGSSSGLPSQGQTINVKEDSSVLKR 331
METSALEAT+VENAF+EVL+QIY IVS++AVEAG+SGSSS +PS GQTINVKEDSSV KR
Sbjct: 153 METSALEATNVENAFSEVLSQIYHIVSKKAVEAGESGSSSAVPSIGQTINVKEDSSVFKR 212
Query: 330 FGCCS 316
FGCCS
Sbjct: 213 FGCCS 217
>gb|AAN03473.1| small GTP-binding protein [Glycine max]
Length = 218
Score = 105 bits (263), Expect = 2e-22
Identities = 52/65 (80%), Positives = 60/65 (92%)
Frame = -1
Query: 510 METSALEATHVENAFTEVLTQIYRIVSQRAVEAGDSGSSSGLPSQGQTINVKEDSSVLKR 331
METSALEAT+VENAFTEVL+QIYRIVS+R VEAG + SSS +PS+GQTINVK+DSSVLK+
Sbjct: 153 METSALEATNVENAFTEVLSQIYRIVSKRTVEAGKNASSSAVPSKGQTINVKDDSSVLKK 212
Query: 330 FGCCS 316
GCCS
Sbjct: 213 IGCCS 217
>sp|Q40195|R11E_LOTJA Ras-related protein Rab11E gi|1370150|emb|CAA98181.1| RAB11E [Lotus
japonicus]
Length = 218
Score = 104 bits (259), Expect = 7e-22
Identities = 53/65 (81%), Positives = 59/65 (90%)
Frame = -1
Query: 510 METSALEATHVENAFTEVLTQIYRIVSQRAVEAGDSGSSSGLPSQGQTINVKEDSSVLKR 331
METSALEAT+VENAF+EVLTQIYRIVS+RAVEAGD S+S +PSQGQTINV EDSSVL R
Sbjct: 153 METSALEATNVENAFSEVLTQIYRIVSKRAVEAGDRPSTSVVPSQGQTINVNEDSSVLNR 212
Query: 330 FGCCS 316
+ CCS
Sbjct: 213 YRCCS 217
>emb|CAB65172.1| Rab11 GTPase [Lycopersicon esculentum]
Length = 218
Score = 100 bits (249), Expect = 1e-20
Identities = 47/66 (71%), Positives = 58/66 (87%)
Frame = -1
Query: 510 METSALEATHVENAFTEVLTQIYRIVSQRAVEAGDSGSSSGLPSQGQTINVKEDSSVLKR 331
METSALEAT+VENAFTE LTQIYRIVS++AVEAGD G++S P +GQTIN+K++ S K+
Sbjct: 153 METSALEATNVENAFTEALTQIYRIVSKKAVEAGDEGATSTAPPKGQTINIKDEGSAWKK 212
Query: 330 FGCCST 313
FGCCS+
Sbjct: 213 FGCCSS 218
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 451,613,329
Number of Sequences: 1393205
Number of extensions: 9466350
Number of successful extensions: 18870
Number of sequences better than 10.0: 142
Number of HSP's better than 10.0 without gapping: 18470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18838
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15942513235
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
