>KMC015168A_C01 KMC015168A_c01
aataaaccaatcctctatttacgattcataaaagtgtaatacaaacacataggatattga
cttgagtaggacaatctaacGAAAGAGTGAGACAATCCTTGAAAAGGTCCTAATGGTAAA
GGATGTTCTTACCACATTACAGGCACTTCAGAACTTTCAAGGTCAAACATGGACCCAAAA
GTTTTTTTATAAACATACTTTCAGTAAATAAATCGTTTTTATAAAAAAACTGTCAACCAA
TTGACCAATATAGATGTACAGATTCACCAAAATTGTCGCGTGTTAATACAAGGATGGCAA
AGTGGGAACCGGTCACTCAAGAAACCAGCAGTGAAGGTTGGATACCAGTTGGAGGCGTTA
GCACTCACTTCGAGGTTAGAAGTGAAAAGAATTCAACTGGTGGATTGAGATGAATGTGCT
TTCGCGTTGACTCAATTGGTATCCAAACACACACTTGATCAATAGCAGTATAAATCAGTG
TTTCAACAAATAGGAAGCCATAACCTGAATTTCCCTTTGCAGAGCATAAGAAGATGCGTA
TCAGATGCCACCAGTAATATCTCAATGAGACTGAGAGGTACCAGCTGCTAGGAACTGTTG
AGTACAACAATGAGCAAGTTCTGGCCCAAGATATGCTATGCAAATTGAGATGATGATAAA
GGAAGAGAAGAAGATGAGTTAATGTTCCAAACAAGCAAAC

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC015168A_C01 KMC015168A_c01
         (700 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAA64427.1| multifunctional protein 2 [Rattus norvegicus]          36  0.45
pir||S74209 multifunctional beta-oxidation protein 2, peroxisoma...    36  0.45
ref|NP_077368.1| peroxisomal multifunctional enzyme type II [Rat...    35  1.3
sp|P97852|DHB4_RAT Estradiol 17 beta-dehydrogenase 4 (17-beta-HS...    35  1.3
pdb|1GZ6|A Chain A, (3r)-Hydroxyacyl-Coa Dehydrogenase Fragment ...    34  2.2

>emb|CAA64427.1| multifunctional protein 2 [Rattus norvegicus]
          Length = 734

 Score = 36.2 bits (82), Expect = 0.45
 Identities = 19/55 (34%), Positives = 31/55 (55%), Gaps = 1/55 (1%)
 Frame = +3

Query: 306 EPVTQETSSEGWIPVGGVSTHFEVRSEKNSTGGLR*MCFRVDSIGI-QTHT*SIA 467
           +P+T E   + W+ +   S   E +S + STGG+  +  ++DS GI Q HT  +A
Sbjct: 261 QPMTPEAVRDNWVKICDFSNASEPKSIQESTGGIIEVLHKIDSEGISQNHTGQVA 315

>pir||S74209 multifunctional beta-oxidation protein 2, peroxisomal - rat
          Length = 735

 Score = 36.2 bits (82), Expect = 0.45
 Identities = 19/55 (34%), Positives = 31/55 (55%), Gaps = 1/55 (1%)
 Frame = +3

Query: 306 EPVTQETSSEGWIPVGGVSTHFEVRSEKNSTGGLR*MCFRVDSIGI-QTHT*SIA 467
           +P+T E   + W+ +   S   E +S + STGG+  +  ++DS GI Q HT  +A
Sbjct: 262 QPMTPEAVRDNWVKICDFSNASEPKSIQESTGGIIEVLHKIDSEGISQNHTGQVA 316

>ref|NP_077368.1| peroxisomal multifunctional enzyme type II [Rattus norvegicus]
           gi|1592545|gb|AAB09724.1| peroxisomal multifunctional
           enzyme type II
          Length = 735

 Score = 34.7 bits (78), Expect = 1.3
 Identities = 18/55 (32%), Positives = 31/55 (55%), Gaps = 1/55 (1%)
 Frame = +3

Query: 306 EPVTQETSSEGWIPVGGVSTHFEVRSEKNSTGGLR*MCFRVDSIGI-QTHT*SIA 467
           +P+T E   + W+ +   S   + +S + STGG+  +  ++DS GI Q HT  +A
Sbjct: 262 QPMTPEAVRDNWVKICDFSNASKPKSIQESTGGIIEVLHKIDSEGISQNHTGQVA 316

>sp|P97852|DHB4_RAT Estradiol 17 beta-dehydrogenase 4 (17-beta-HSD 4)
           (17-beta-hydroxysteroid dehydrogenase 4) (HSD IV)
           gi|1881831|gb|AAB49519.1| 17 beta-hydroxysteroid
           dehydrogenase type IV; HSD IV [Rattus sp.]
          Length = 735

 Score = 34.7 bits (78), Expect = 1.3
 Identities = 18/55 (32%), Positives = 31/55 (55%), Gaps = 1/55 (1%)
 Frame = +3

Query: 306 EPVTQETSSEGWIPVGGVSTHFEVRSEKNSTGGLR*MCFRVDSIGI-QTHT*SIA 467
           +P+T E   + W+ +   S   + +S + STGG+  +  ++DS GI Q HT  +A
Sbjct: 262 QPMTPEAVRDNWVKICDFSNASKPKSIQESTGGIIEVLHKIDSEGISQNHTGQVA 316

>pdb|1GZ6|A Chain A, (3r)-Hydroxyacyl-Coa Dehydrogenase Fragment Of Rat
           Peroxisomal Multifunctional Enzyme Type 2
           gi|28373304|pdb|1GZ6|B Chain B, (3r)-Hydroxyacyl-Coa
           Dehydrogenase Fragment Of Rat Peroxisomal
           Multifunctional Enzyme Type 2 gi|28373305|pdb|1GZ6|C
           Chain C, (3r)-Hydroxyacyl-Coa Dehydrogenase Fragment Of
           Rat Peroxisomal Multifunctional Enzyme Type 2
           gi|28373306|pdb|1GZ6|D Chain D, (3r)-Hydroxyacyl-Coa
           Dehydrogenase Fragment Of Rat Peroxisomal
           Multifunctional Enzyme Type 2
          Length = 319

 Score = 33.9 bits (76), Expect = 2.2
 Identities = 18/55 (32%), Positives = 30/55 (53%), Gaps = 1/55 (1%)
 Frame = +3

Query: 306 EPVTQETSSEGWIPVGGVSTHFEVRSEKNSTGGLR*MCFRVDSIGI-QTHT*SIA 467
           +P T E   + W+ +   S   + +S + STGG+  +  ++DS GI Q HT  +A
Sbjct: 262 QPXTPEAVRDNWVKICDFSNASKPKSIQESTGGIIEVLHKIDSEGISQNHTGQVA 316

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 561,879,469
Number of Sequences: 1393205
Number of extensions: 11578625
Number of successful extensions: 34306
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 33306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34301
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31967457276
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

EST assemble image

clone accession position 1 MFBL019d02_f BP042209 1 406 2 MWM051h04_f AV765505 158 700

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