Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015164A_C01 KMC015164A_c01
(620 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM67070.1| unknown [Arabidopsis thaliana] 78 8e-14
gb|AAK96846.1| Unknown protein [Arabidopsis thaliana] gi|1837750... 78 8e-14
pir||E86318 protein F15H18.4 [imported] - Arabidopsis thaliana g... 78 8e-14
ref|NP_564055.1| expressed protein; protein id: At1g18490.1, sup... 78 8e-14
ref|NP_198805.1| putative protein; protein id: At5g39890.1, supp... 56 4e-07
>gb|AAM67070.1| unknown [Arabidopsis thaliana]
Length = 259
Score = 78.2 bits (191), Expect = 8e-14
Identities = 34/61 (55%), Positives = 44/61 (71%), Gaps = 3/61 (4%)
Frame = -3
Query: 618 EDEGRKCTYYHDYPYSTFS---GKGSIGDGEEDEYAWLAEIETPGDLYMRSGVYAGPAIK 448
E GR C+YY DYP+STF+ G + +G+EDEYAWL +I+TP DL+MR G Y GP I+
Sbjct: 199 ESVGRSCSYYMDYPFSTFALENGMKKVDEGKEDEYAWLVQIDTPDDLHMRPGSYTGPTIR 258
Query: 447 V 445
V
Sbjct: 259 V 259
>gb|AAK96846.1| Unknown protein [Arabidopsis thaliana] gi|18377500|gb|AAL66916.1|
unknown protein [Arabidopsis thaliana]
Length = 226
Score = 78.2 bits (191), Expect = 8e-14
Identities = 34/61 (55%), Positives = 44/61 (71%), Gaps = 3/61 (4%)
Frame = -3
Query: 618 EDEGRKCTYYHDYPYSTFS---GKGSIGDGEEDEYAWLAEIETPGDLYMRSGVYAGPAIK 448
E GR C+YY DYP+STF+ G + +G+EDEYAWL +I+TP DL+MR G Y GP I+
Sbjct: 166 ESVGRSCSYYMDYPFSTFALENGMKKVDEGKEDEYAWLVQIDTPDDLHMRPGSYTGPTIR 225
Query: 447 V 445
V
Sbjct: 226 V 226
>pir||E86318 protein F15H18.4 [imported] - Arabidopsis thaliana
gi|6714305|gb|AAF26001.1|AC013354_20 F15H18.4
[Arabidopsis thaliana]
Length = 1702
Score = 78.2 bits (191), Expect = 8e-14
Identities = 34/61 (55%), Positives = 44/61 (71%), Gaps = 3/61 (4%)
Frame = -3
Query: 618 EDEGRKCTYYHDYPYSTFS---GKGSIGDGEEDEYAWLAEIETPGDLYMRSGVYAGPAIK 448
E GR C+YY DYP+STF+ G + +G+EDEYAWL +I+TP DL+MR G Y GP I+
Sbjct: 1642 ESVGRSCSYYMDYPFSTFALENGMKKVDEGKEDEYAWLVQIDTPDDLHMRPGSYTGPTIR 1701
Query: 447 V 445
V
Sbjct: 1702 V 1702
>ref|NP_564055.1| expressed protein; protein id: At1g18490.1, supported by cDNA:
94234. [Arabidopsis thaliana]
Length = 282
Score = 78.2 bits (191), Expect = 8e-14
Identities = 34/61 (55%), Positives = 44/61 (71%), Gaps = 3/61 (4%)
Frame = -3
Query: 618 EDEGRKCTYYHDYPYSTFS---GKGSIGDGEEDEYAWLAEIETPGDLYMRSGVYAGPAIK 448
E GR C+YY DYP+STF+ G + +G+EDEYAWL +I+TP DL+MR G Y GP I+
Sbjct: 222 ESVGRSCSYYMDYPFSTFALENGMKKVDEGKEDEYAWLVQIDTPDDLHMRPGSYTGPTIR 281
Query: 447 V 445
V
Sbjct: 282 V 282
>ref|NP_198805.1| putative protein; protein id: At5g39890.1, supported by cDNA:
100590. [Arabidopsis thaliana]
gi|21536502|gb|AAM60834.1| unknown [Arabidopsis
thaliana] gi|27808558|gb|AAO24559.1| At5g39890
[Arabidopsis thaliana]
Length = 276
Score = 55.8 bits (133), Expect = 4e-07
Identities = 30/56 (53%), Positives = 37/56 (65%), Gaps = 2/56 (3%)
Frame = -3
Query: 609 GRKCTYYHDYPYSTFSGKGSIGDGEEDE-YAWLAE-IETPGDLYMRSGVYAGPAIK 448
GR CTYY DYP+S+FS G + EE E YAWL E E P DL + + +Y+GP IK
Sbjct: 220 GRHCTYYFDYPFSSFSVDGVVVAEEEKEGYAWLKEREEKPEDLTVTALMYSGPTIK 275
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 532,904,510
Number of Sequences: 1393205
Number of extensions: 11460160
Number of successful extensions: 22757
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 22180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22743
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25017613016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
