Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015162A_C01 KMC015162A_c01
(562 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P30124|HEM2_PEA Delta-aminolevulinic acid dehydratase, chloro... 209 1e-53
sp|P43210|HEM2_SOYBN Delta-aminolevulinic acid dehydratase, chlo... 201 4e-51
sp|P24493|HEM2_SPIOL Delta-aminolevulinic acid dehydratase, chlo... 197 1e-49
prf||1809406A aminolevulinate dehydratase 197 1e-49
pir||A50000 porphobilinogen synthase (EC 4.2.1.24) precursor - s... 197 1e-49
>sp|P30124|HEM2_PEA Delta-aminolevulinic acid dehydratase, chloroplast precursor
(Porphobilinogen synthase) (ALADH) gi|81940|pir||A40966
porphobilinogen synthase (EC 4.2.1.24) ALAD [validated]
- garden pea (fragment) gi|169031|gb|AAA33640.1|
aminolevulinic acid dehydratase
Length = 398
Score = 209 bits (533), Expect = 1e-53
Identities = 104/109 (95%), Positives = 108/109 (98%)
Frame = -3
Query: 560 TYQMNPANYREALTEMREDESEGADILLVKPALPYLDVIRLLRDNSPLPIAAYQVSGEYS 381
TYQMNPANYREALTEMREDESEGADILLVKP LPYLD+IRLLRDNSPLPIAAYQVSGEYS
Sbjct: 290 TYQMNPANYREALTEMREDESEGADILLVKPGLPYLDIIRLLRDNSPLPIAAYQVSGEYS 349
Query: 380 MIQAGGALKMIDEEKVMMESLLCLRRAGADVILTYFALQAARSLCGEKR 234
MI+AGGALKMIDEEKVMMESLLCLRRAGAD+ILTYFALQAAR+LCGEKR
Sbjct: 350 MIKAGGALKMIDEEKVMMESLLCLRRAGADIILTYFALQAARTLCGEKR 398
>sp|P43210|HEM2_SOYBN Delta-aminolevulinic acid dehydratase, chloroplast precursor
(Porphobilinogen synthase) (ALADH)
gi|7437030|pir||T06351 porphobilinogen synthase (EC
4.2.1.24) - soybean gi|468000|gb|AAA18342.1|
delta-aminolevulinic acid dehydratase
Length = 412
Score = 201 bits (512), Expect = 4e-51
Identities = 100/109 (91%), Positives = 105/109 (95%)
Frame = -3
Query: 560 TYQMNPANYREALTEMREDESEGADILLVKPALPYLDVIRLLRDNSPLPIAAYQVSGEYS 381
TYQMNPANYREALTEMREDESEGADILLVKP LPYLD+IRLLRDNSPLPIAAYQVSGEY+
Sbjct: 304 TYQMNPANYREALTEMREDESEGADILLVKPGLPYLDIIRLLRDNSPLPIAAYQVSGEYA 363
Query: 380 MIQAGGALKMIDEEKVMMESLLCLRRAGADVILTYFALQAARSLCGEKR 234
MI+A GALKMIDEEKVMMESL+CLRRAGAD+ILTY ALQAAR LCGEKR
Sbjct: 364 MIKAAGALKMIDEEKVMMESLMCLRRAGADIILTYSALQAARCLCGEKR 412
>sp|P24493|HEM2_SPIOL Delta-aminolevulinic acid dehydratase, chloroplast precursor
(Porphobilinogen synthase) (ALADH) (ALAD)
gi|805062|emb|CAA40974.1| porphobilinogen synthase
[Spinacia oleracea]
Length = 433
Score = 197 bits (500), Expect = 1e-49
Identities = 98/109 (89%), Positives = 103/109 (93%)
Frame = -3
Query: 560 TYQMNPANYREALTEMREDESEGADILLVKPALPYLDVIRLLRDNSPLPIAAYQVSGEYS 381
TYQMNPANYREAL E +EDESEGADILLVKP LPYLD+IRLLRDNS LPIAAYQVSGEYS
Sbjct: 325 TYQMNPANYREALIETQEDESEGADILLVKPGLPYLDIIRLLRDNSDLPIAAYQVSGEYS 384
Query: 380 MIQAGGALKMIDEEKVMMESLLCLRRAGADVILTYFALQAARSLCGEKR 234
MI+AGG LKMIDEEKVM+ESLLCLRRAGAD+ILTYFALQAAR LCGEKR
Sbjct: 385 MIKAGGVLKMIDEEKVMLESLLCLRRAGADIILTYFALQAARCLCGEKR 433
>prf||1809406A aminolevulinate dehydratase
Length = 423
Score = 197 bits (500), Expect = 1e-49
Identities = 98/109 (89%), Positives = 103/109 (93%)
Frame = -3
Query: 560 TYQMNPANYREALTEMREDESEGADILLVKPALPYLDVIRLLRDNSPLPIAAYQVSGEYS 381
TYQMNPANYREAL E +EDESEGADILLVKP LPYLD+IRLLRDNS LPIAAYQVSGEYS
Sbjct: 315 TYQMNPANYREALIETQEDESEGADILLVKPGLPYLDIIRLLRDNSDLPIAAYQVSGEYS 374
Query: 380 MIQAGGALKMIDEEKVMMESLLCLRRAGADVILTYFALQAARSLCGEKR 234
MI+AGG LKMIDEEKVM+ESLLCLRRAGAD+ILTYFALQAAR LCGEKR
Sbjct: 375 MIKAGGVLKMIDEEKVMLESLLCLRRAGADIILTYFALQAARCLCGEKR 423
>pir||A50000 porphobilinogen synthase (EC 4.2.1.24) precursor - spinach
Length = 424
Score = 197 bits (500), Expect = 1e-49
Identities = 98/109 (89%), Positives = 103/109 (93%)
Frame = -3
Query: 560 TYQMNPANYREALTEMREDESEGADILLVKPALPYLDVIRLLRDNSPLPIAAYQVSGEYS 381
TYQMNPANYREAL E +EDESEGADILLVKP LPYLD+IRLLRDNS LPIAAYQVSGEYS
Sbjct: 316 TYQMNPANYREALIETQEDESEGADILLVKPGLPYLDIIRLLRDNSDLPIAAYQVSGEYS 375
Query: 380 MIQAGGALKMIDEEKVMMESLLCLRRAGADVILTYFALQAARSLCGEKR 234
MI+AGG LKMIDEEKVM+ESLLCLRRAGAD+ILTYFALQAAR LCGEKR
Sbjct: 376 MIKAGGVLKMIDEEKVMLESLLCLRRAGADIILTYFALQAARCLCGEKR 424
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 457,234,854
Number of Sequences: 1393205
Number of extensions: 9345632
Number of successful extensions: 19464
Number of sequences better than 10.0: 207
Number of HSP's better than 10.0 without gapping: 18924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19413
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
