Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015146A_C01 KMC015146A_c01
(550 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_189678.1| putative reverse transcriptase; protein id: At3... 33 3.0
ref|NP_193294.1| reverse transcriptase like protein; protein id:... 33 3.0
ref|NP_792463.1| aldehyde oxidase and xanthine dehydrogenase fam... 32 6.6
ref|NP_104709.1| ABC transporter, permease protein, MalFG family... 32 6.6
ref|ZP_00126914.1| hypothetical protein [Pseudomonas syringae pv... 32 6.6
>ref|NP_189678.1| putative reverse transcriptase; protein id: At3g30570.1
[Arabidopsis thaliana]
Length = 1099
Score = 32.7 bits (73), Expect = 3.0
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = +1
Query: 388 PFNSKVSWLSHEGFDQPTQEKWDISIPWIDSCKGYIHIRQAFSS*NNEAF 537
PF + +WLSH GF + W +IP ++ KG I+ N E F
Sbjct: 292 PFRFEAAWLSHPGFKELLLASWKGNIPTPEALKG---IQTTLRKWNKEVF 338
>ref|NP_193294.1| reverse transcriptase like protein; protein id: At4g15590.1
[Arabidopsis thaliana] gi|7485171|pir||G71420
hypothetical protein - Arabidopsis thaliana
gi|2244915|emb|CAB10337.1| reverse transcriptase like
protein [Arabidopsis thaliana]
gi|7268307|emb|CAB78601.1| reverse transcriptase like
protein [Arabidopsis thaliana]
Length = 929
Score = 32.7 bits (73), Expect = 3.0
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 14/54 (25%)
Frame = +1
Query: 388 PFNSKVSWLSHEGFDQPTQEKWD--ISIP------------WIDSCKGYIHIRQ 507
PF + +WLSHEGF + WD +S P W G IH+R+
Sbjct: 54 PFRFEAAWLSHEGFKELLTASWDTGLSTPVALNRLRWQLKKWNKEVFGNIHVRK 107
>ref|NP_792463.1| aldehyde oxidase and xanthine dehydrogenase family protein
[Pseudomonas syringae pv. tomato str. DC3000]
gi|28853089|gb|AAO56158.1| aldehyde oxidase and xanthine
dehydrogenase family protein [Pseudomonas syringae pv.
tomato str. DC3000]
Length = 679
Score = 31.6 bits (70), Expect = 6.6
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +1
Query: 295 FQYHLTTSLLSHRILLSYVFGMSPCQIDIIEPF 393
F Y T +++HR LL+ VF +SP ++++ PF
Sbjct: 146 FVYESTQGVVNHRNLLANVFDLSPDRVEVRAPF 178
>ref|NP_104709.1| ABC transporter, permease protein, MalFG family [Mesorhizobium
loti] gi|14023890|dbj|BAB50495.1| ABC transporter,
permease protein, MalFG family [Mesorhizobium loti]
Length = 281
Score = 31.6 bits (70), Expect = 6.6
Identities = 17/42 (40%), Positives = 24/42 (56%)
Frame = +1
Query: 322 LSHRILLSYVFGMSPCQIDIIEPFNSKVSWLSHEGFDQPTQE 447
LSH LL+ VFG++ + I+ PF +WL GFD +E
Sbjct: 134 LSHLGLLNNVFGLALVYLTILAPF---TTWLMKSGFDSIPRE 172
>ref|ZP_00126914.1| hypothetical protein [Pseudomonas syringae pv. syringae B728a]
Length = 738
Score = 31.6 bits (70), Expect = 6.6
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +1
Query: 295 FQYHLTTSLLSHRILLSYVFGMSPCQIDIIEPF 393
F Y T +++HR LL+ VF +SP ++++ PF
Sbjct: 205 FVYESTQGVVNHRNLLANVFDLSPDRVEVRAPF 237
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 485,197,006
Number of Sequences: 1393205
Number of extensions: 10608414
Number of successful extensions: 21753
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 21277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21748
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
