Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015133A_C01 KMC015133A_c01
(610 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAC64607.1| Tic20 [Pisum sativum] 194 1e-52
dbj|BAC41843.1| unknown protein [Arabidopsis thaliana] 176 6e-49
gb|AAF34764.1|AF227619_1 Tic20-like protein [Euphorbia esula] 163 2e-44
ref|NP_171986.1| unknown protein; protein id: At1g04940.1 [Arabi... 147 3e-40
dbj|BAC55672.1| putative Tic20 protein [Oryza sativa (japonica c... 81 1e-14
>gb|AAC64607.1| Tic20 [Pisum sativum]
Length = 253
Score = 194 bits (494), Expect(2) = 1e-52
Identities = 99/161 (61%), Positives = 117/161 (72%)
Frame = +1
Query: 70 MIRNGCIVHQGYAPLNTRPCRGSSSVFSCASQLPAKVAVSNIRSSWGHSLESKSLVPRGI 249
MI+NG V QG SV A Q+PAKVAVS+IRS WGHSLE+K PRG+
Sbjct: 1 MIQNGGTVSQG-------------SVLCYACQIPAKVAVSSIRSFWGHSLENK---PRGM 44
Query: 250 ALSNMSSASSLLLSGGQNLLFRTVPVLPPRVRKSSMAPRAAKDVPSSFRFPPMTKKPRWW 429
++MS+ SSLLLSGGQN L RT+PVLP + KSS PRA KD S FRFPPMTKKPRWW
Sbjct: 45 TFTDMSATSSLLLSGGQNFLSRTIPVLPT-LHKSSTTPRATKD-SSGFRFPPMTKKPRWW 102
Query: 430 WRTLACLPYLMPLHETWMYAETAYNLHPFLEFFEFYTYPFL 552
WRTL+C+PYL+P H+ WMYA TAY+LHPF+ +F+ TYPFL
Sbjct: 103 WRTLSCIPYLLPFHQAWMYARTAYHLHPFIPYFQPMTYPFL 143
Score = 34.3 bits (77), Expect(2) = 1e-52
Identities = 13/21 (61%), Positives = 16/21 (75%)
Frame = +2
Query: 548 FFMAIGSLPSWFFMAYFFVAY 610
F MAIG+LP W +AYF +AY
Sbjct: 142 FLMAIGTLPRWSLIAYFLIAY 162
>dbj|BAC41843.1| unknown protein [Arabidopsis thaliana]
Length = 274
Score = 176 bits (447), Expect(2) = 6e-49
Identities = 91/145 (62%), Positives = 110/145 (75%), Gaps = 6/145 (4%)
Frame = +1
Query: 136 SSSVFSCASQLPAKVAVSN---IRSSWGHSLESKSLVPR---GIALSNMSSASSLLLSGG 297
SSS + A Q +A S+ +++SWG + +PR G+ LS +S++SSLLL+G
Sbjct: 21 SSSYRAAAGQTQHYLARSSLPVVKNSWGSPPSPFNELPRVSRGVPLSYLSASSSLLLNGE 80
Query: 298 QNLLFRTVPVLPPRVRKSSMAPRAAKDVPSSFRFPPMTKKPRWWWRTLACLPYLMPLHET 477
Q L T+PVLP R RK+ + PRA+KDVPSSFRFPPMTKKP+WWWRTLACLPYLMPLHET
Sbjct: 81 QGSLSGTLPVLPVR-RKTLLTPRASKDVPSSFRFPPMTKKPQWWWRTLACLPYLMPLHET 139
Query: 478 WMYAETAYNLHPFLEFFEFYTYPFL 552
WMYAETAY+LHPFLE FEF TYPFL
Sbjct: 140 WMYAETAYHLHPFLEDFEFLTYPFL 164
Score = 39.7 bits (91), Expect(2) = 6e-49
Identities = 17/21 (80%), Positives = 17/21 (80%)
Frame = +2
Query: 548 FFMAIGSLPSWFFMAYFFVAY 610
F AIG LPSWF MAYFFVAY
Sbjct: 163 FLGAIGRLPSWFLMAYFFVAY 183
>gb|AAF34764.1|AF227619_1 Tic20-like protein [Euphorbia esula]
Length = 267
Score = 163 bits (413), Expect(2) = 2e-44
Identities = 90/164 (54%), Positives = 107/164 (64%), Gaps = 3/164 (1%)
Frame = +1
Query: 70 MIRNGCIVHQGYA---PLNTRPCRGSSSVFSCASQLPAKVAVSNIRSSWGHSLESKSLVP 240
MI NGC G P N+ C S S S + K A SNIR S S+ ++L
Sbjct: 1 MILNGCTRPPGGGCAFPSNST-CNPRSG--SLVSAVTTKPAFSNIRCS---SIPIEALTS 54
Query: 241 RGIALSNMSSASSLLLSGGQNLLFRTVPVLPPRVRKSSMAPRAAKDVPSSFRFPPMTKKP 420
R +SS S+ L+G + ++ T+P P + S ++PRAAKDVPSSFRFPPMT+KP
Sbjct: 55 RFWPSRGLSSGSTRFLTGEEGRIWHTLPSFPTH-KNSKLSPRAAKDVPSSFRFPPMTRKP 113
Query: 421 RWWWRTLACLPYLMPLHETWMYAETAYNLHPFLEFFEFYTYPFL 552
RWWWR LACLPYLMPLHETWMYAETAY+LHPFLE FEF TYPFL
Sbjct: 114 RWWWRMLACLPYLMPLHETWMYAETAYHLHPFLEDFEFLTYPFL 157
Score = 37.4 bits (85), Expect(2) = 2e-44
Identities = 16/21 (76%), Positives = 16/21 (76%)
Frame = +2
Query: 548 FFMAIGSLPSWFFMAYFFVAY 610
F AIG LPSWF MAYF VAY
Sbjct: 156 FLGAIGRLPSWFLMAYFLVAY 176
>ref|NP_171986.1| unknown protein; protein id: At1g04940.1 [Arabidopsis thaliana]
Length = 501
Score = 147 bits (372), Expect(2) = 3e-40
Identities = 81/142 (57%), Positives = 97/142 (68%), Gaps = 3/142 (2%)
Frame = +1
Query: 136 SSSVFSCASQLPAKVAVSN---IRSSWGHSLESKSLVPRGIALSNMSSASSLLLSGGQNL 306
SSS + A Q +A S+ +++SWG + +PR +S AS + LS L
Sbjct: 21 SSSYRAAAGQTQHYLARSSLPVVKNSWGSPPSPFNELPR---VSRGMCASVISLS----L 73
Query: 307 LFRTVPVLPPRVRKSSMAPRAAKDVPSSFRFPPMTKKPRWWWRTLACLPYLMPLHETWMY 486
+F R RK+ + PRA+KDVPSSFRFPPMTKKP+WWWRTLACLPYLMPLHETWMY
Sbjct: 74 VFSASEW---RTRKTLLTPRASKDVPSSFRFPPMTKKPQWWWRTLACLPYLMPLHETWMY 130
Query: 487 AETAYNLHPFLEFFEFYTYPFL 552
AETAY+LHPFLE FEF TYPFL
Sbjct: 131 AETAYHLHPFLEDFEFLTYPFL 152
Score = 39.7 bits (91), Expect(2) = 3e-40
Identities = 17/21 (80%), Positives = 17/21 (80%)
Frame = +2
Query: 548 FFMAIGSLPSWFFMAYFFVAY 610
F AIG LPSWF MAYFFVAY
Sbjct: 151 FLGAIGRLPSWFLMAYFFVAY 171
>dbj|BAC55672.1| putative Tic20 protein [Oryza sativa (japonica cultivar-group)]
Length = 249
Score = 80.9 bits (198), Expect = 1e-14
Identities = 39/94 (41%), Positives = 58/94 (61%), Gaps = 4/94 (4%)
Frame = +1
Query: 274 SSLLLSGGQNLLFRTVPVLPPRV---RKSSMAPRAAKDVPSSFRFPPMTKKPRWWWRTLA 444
+ +L S G++ + +P L R R+ + RA+ +SF +P +T KPRWWWRT+A
Sbjct: 44 NDMLASFGRDDSIKGIPSLAARHSQHRRLEVGCRASS--LASFSYPELTSKPRWWWRTVA 101
Query: 445 CLPYLMPLHETWMYAETAYNLHPFLEFFEF-YTY 543
C+PYL+PLH W YA+ Y LH +L+ F YT+
Sbjct: 102 CVPYLLPLHNMWSYADVIYQLHTYLQGFSLVYTF 135
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 557,992,895
Number of Sequences: 1393205
Number of extensions: 12687643
Number of successful extensions: 31832
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 30770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31819
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24283162270
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
