Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015125A_C01 KMC015125A_c01
(540 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF34799.1|AF227979_1 40S ribosomal protein S16 [Euphorbia es... 232 2e-60
ref|NP_178826.1| 40S ribosomal protein S16; protein id: At2g0999... 224 4e-58
ref|NP_197339.1| 40S RIBOSOMAL PROTEIN S16; protein id: At5g1838... 224 5e-58
sp|P46293|RS16_GOSHI 40S RIBOSOMAL PROTEIN S16 gi|541835|pir||S4... 223 1e-57
sp|P16149|RS16_LUPPO 40S RIBOSOMAL PROTEIN S16 gi|70921|pir||R3Y... 223 2e-57
>gb|AAF34799.1|AF227979_1 40S ribosomal protein S16 [Euphorbia esula]
Length = 144
Score = 232 bits (591), Expect = 2e-60
Identities = 112/118 (94%), Positives = 118/118 (99%)
Frame = -1
Query: 540 RGLIKINGCPIELIQPEILRFKAFEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSI 361
RGLIKINGCPIEL++PEILRFKA+EPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSI
Sbjct: 27 RGLIKINGCPIELVEPEILRFKAYEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSI 86
Query: 360 AKALVAYYQKYVDEQSKKEIKDILIRYDRTLLVADPRRCEPKKFGGRGARSRFQKSYR 187
AKALVAYYQK+VDEQSKKEIKDIL+RYDRTLLVADPRRCEPKKFGGRGAR+RFQKSYR
Sbjct: 87 AKALVAYYQKFVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 144
>ref|NP_178826.1| 40S ribosomal protein S16; protein id: At2g09990.1, supported by
cDNA: 29241., supported by cDNA: gi_13926207
[Arabidopsis thaliana] gi|25294609|pir||E84489 40S
ribosomal protein S16 [imported] - Arabidopsis thaliana
gi|4558679|gb|AAD22696.1| 40S ribosomal protein S16
[Arabidopsis thaliana]
gi|13926208|gb|AAK49582.1|AF370576_1 40S ribosomal
protein S16 [Arabidopsis thaliana]
gi|21555842|gb|AAM63947.1| 40S ribosomal protein S16
[Arabidopsis thaliana]
Length = 146
Score = 224 bits (572), Expect = 4e-58
Identities = 108/117 (92%), Positives = 114/117 (97%)
Frame = -1
Query: 537 GLIKINGCPIELIQPEILRFKAFEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIA 358
GLIK+NGCPIEL QPEILRFK FEPILLLG+HRFAGV+MRIRV GGGHTSQ+YAIRQSIA
Sbjct: 30 GLIKLNGCPIELFQPEILRFKIFEPILLLGKHRFAGVNMRIRVNGGGHTSQVYAIRQSIA 89
Query: 357 KALVAYYQKYVDEQSKKEIKDILIRYDRTLLVADPRRCEPKKFGGRGARSRFQKSYR 187
KALVAYYQKYVDEQSKKEIKDIL+RYDRTLLVADPRRCEPKKFGGRGARSR+QKSYR
Sbjct: 90 KALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQKSYR 146
>ref|NP_197339.1| 40S RIBOSOMAL PROTEIN S16; protein id: At5g18380.1, supported by
cDNA: gi_13877830, supported by cDNA: gi_16323499
[Arabidopsis thaliana] gi|2500430|sp|Q42340|RS16_ARATH
40S ribosomal protein S16
gi|13877831|gb|AAK43993.1|AF370178_1 putative 40S
ribosomal protein S16 [Arabidopsis thaliana]
gi|16323500|gb|AAL15244.1| putative 40S ribosomal
protein S16 [Arabidopsis thaliana]
Length = 146
Score = 224 bits (571), Expect = 5e-58
Identities = 107/117 (91%), Positives = 114/117 (96%)
Frame = -1
Query: 537 GLIKINGCPIELIQPEILRFKAFEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIA 358
GLIK+NGCPIEL QPEILRFK FEP+LLLG+HRFAGV+MRIRV GGGHTSQ+YAIRQSIA
Sbjct: 30 GLIKLNGCPIELFQPEILRFKIFEPVLLLGKHRFAGVNMRIRVNGGGHTSQVYAIRQSIA 89
Query: 357 KALVAYYQKYVDEQSKKEIKDILIRYDRTLLVADPRRCEPKKFGGRGARSRFQKSYR 187
KALVAYYQKYVDEQSKKEIKDIL+RYDRTLLVADPRRCEPKKFGGRGARSR+QKSYR
Sbjct: 90 KALVAYYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARSRYQKSYR 146
>sp|P46293|RS16_GOSHI 40S RIBOSOMAL PROTEIN S16 gi|541835|pir||S41193 ribosomal protein
S16 protein - upland cotton gi|439654|emb|CAA53567.1|
RS16 protein, 40S subunit [Gossypium hirsutum]
Length = 145
Score = 223 bits (568), Expect = 1e-57
Identities = 109/118 (92%), Positives = 114/118 (96%)
Frame = -1
Query: 540 RGLIKINGCPIELIQPEILRFKAFEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSI 361
RGLIKINGCPIEL++PEILRFKA EPILLLGR RF GVDMRIRVKGGGHTSQIYAIRQSI
Sbjct: 28 RGLIKINGCPIELVEPEILRFKAVEPILLLGRQRFTGVDMRIRVKGGGHTSQIYAIRQSI 87
Query: 360 AKALVAYYQKYVDEQSKKEIKDILIRYDRTLLVADPRRCEPKKFGGRGARSRFQKSYR 187
AKALVA+YQKYVDEQSKKEIKDIL+ YDRTLLVADPRRCEPKKFGGRGAR+RFQKSYR
Sbjct: 88 AKALVAFYQKYVDEQSKKEIKDILVGYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 145
>sp|P16149|RS16_LUPPO 40S RIBOSOMAL PROTEIN S16 gi|70921|pir||R3YL16 ribosomal protein
S16, cytosolic - large-leaved lupine
gi|19512|emb|CAA36068.1| rps16 gene product (AA 1-145)
[Lupinus polyphyllus]
Length = 145
Score = 223 bits (567), Expect = 2e-57
Identities = 109/117 (93%), Positives = 115/117 (98%)
Frame = -1
Query: 537 GLIKINGCPIELIQPEILRFKAFEPILLLGRHRFAGVDMRIRVKGGGHTSQIYAIRQSIA 358
GLIKING PIEL++PEILRFKAFEPILLLG+ RFAGVDMRIRVKGGGHTSQIYAIRQSIA
Sbjct: 29 GLIKINGSPIELVEPEILRFKAFEPILLLGKSRFAGVDMRIRVKGGGHTSQIYAIRQSIA 88
Query: 357 KALVAYYQKYVDEQSKKEIKDILIRYDRTLLVADPRRCEPKKFGGRGARSRFQKSYR 187
KALVA+YQKYVDEQSKKEIKDIL+RYDRTLLVADPRRCEPKKFGGRGAR+RFQKSYR
Sbjct: 89 KALVAFYQKYVDEQSKKEIKDILVRYDRTLLVADPRRCEPKKFGGRGARARFQKSYR 145
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 465,064,325
Number of Sequences: 1393205
Number of extensions: 10736787
Number of successful extensions: 55270
Number of sequences better than 10.0: 476
Number of HSP's better than 10.0 without gapping: 40980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49646
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
