Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015124A_C01 KMC015124A_c01
(1106 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564591.1| RNA-binding protein, putative; protein id: At1g... 259 5e-68
gb|AAM61070.1| RNA-binding protein, putative [Arabidopsis thaliana] 258 9e-68
pir||E96553 probable RNA-binding protein 35994-37391 [imported] ... 241 2e-62
ref|NP_005096.1| RNA binding motif protein 8A; RNA binding motif... 158 2e-37
gb|AAG27092.1|AF299119_1 RNA-binding protein Y14 [Xenopus laevis] 158 2e-37
>ref|NP_564591.1| RNA-binding protein, putative; protein id: At1g51510.1, supported by
cDNA: 10976., supported by cDNA: gi_15010563 [Arabidopsis
thaliana]
Length = 202
Score = 259 bits (662), Expect = 5e-68
Identities = 133/201 (66%), Positives = 160/201 (79%), Gaps = 5/201 (2%)
Frame = -2
Query: 1048 EGEALDFEPEDDDLMDEDGAP--DADASPP--HPKLKSAITSGAAPSLSAPKKTKGRGFR 881
E EA+DFEPE+DDLMDE+G AD SP HP+LKSAI S KKTKGRGFR
Sbjct: 5 ESEAVDFEPEEDDLMDEEGTAIDGADVSPRAGHPRLKSAIAGANGESA---KKTKGRGFR 61
Query: 880 QETDTNRNNRLSGSDFDSLTTEGGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEYGEI 701
+E D++R RLS DF+SL ++G PGPQRS+EGWIILV+GVHEE QE+D+ NAFG++GEI
Sbjct: 62 EEKDSDRQRRLSSRDFESLGSDGRPGPQRSVEGWIILVSGVHEETQEEDITNAFGDFGEI 121
Query: 700 KNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENLNGSELLTPNIYVDWAFSSGPI-NES 524
KNL+LNLDRR+G+VKGYALIEYE+ EEA++AI +NG+ELLT N+ VDWAFSSGP ES
Sbjct: 122 KNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAMNGAELLTQNVSVDWAFSSGPSGGES 181
Query: 523 IRRKNARPTRDRRSRSPRRRY 461
RRKN+R R +RSRSPRRRY
Sbjct: 182 YRRKNSRYGRSQRSRSPRRRY 202
>gb|AAM61070.1| RNA-binding protein, putative [Arabidopsis thaliana]
Length = 202
Score = 258 bits (660), Expect = 9e-68
Identities = 133/201 (66%), Positives = 159/201 (78%), Gaps = 5/201 (2%)
Frame = -2
Query: 1048 EGEALDFEPEDDDLMDEDGAP--DADASPP--HPKLKSAITSGAAPSLSAPKKTKGRGFR 881
E EA+DFEPE+DDLMDE+G AD SP HP+LKSAI S KKTKGRGFR
Sbjct: 5 ESEAVDFEPEEDDLMDEEGTAIDGADVSPRAGHPRLKSAIAGANGESA---KKTKGRGFR 61
Query: 880 QETDTNRNNRLSGSDFDSLTTEGGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEYGEI 701
E D++R RLS DF+SL ++G PGPQRS+EGWIILV+GVHEE QE+D+ NAFG++GEI
Sbjct: 62 DEKDSDRQRRLSSRDFESLGSDGRPGPQRSVEGWIILVSGVHEETQEEDITNAFGDFGEI 121
Query: 700 KNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENLNGSELLTPNIYVDWAFSSGPI-NES 524
KNL+LNLDRR+G+VKGYALIEYE+ EEA++AI +NG+ELLT N+ VDWAFSSGP ES
Sbjct: 122 KNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAMNGAELLTQNVSVDWAFSSGPSGGES 181
Query: 523 IRRKNARPTRDRRSRSPRRRY 461
RRKN+R R +RSRSPRRRY
Sbjct: 182 YRRKNSRYGRSQRSRSPRRRY 202
>pir||E96553 probable RNA-binding protein 35994-37391 [imported] - Arabidopsis
thaliana gi|12325357|gb|AAG52616.1|AC024261_3 RNA-binding
protein, putative; 35994-37391 [Arabidopsis thaliana]
Length = 191
Score = 241 bits (614), Expect = 2e-62
Identities = 123/187 (65%), Positives = 149/187 (78%), Gaps = 5/187 (2%)
Frame = -2
Query: 1048 EGEALDFEPEDDDLMDEDGAP--DADASPP--HPKLKSAITSGAAPSLSAPKKTKGRGFR 881
E EA+DFEPE+DDLMDE+G AD SP HP+LKSAI S KKTKGRGFR
Sbjct: 5 ESEAVDFEPEEDDLMDEEGTAIDGADVSPRAGHPRLKSAIAGANGESA---KKTKGRGFR 61
Query: 880 QETDTNRNNRLSGSDFDSLTTEGGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEYGEI 701
+E D++R RLS DF+SL ++G PGPQRS+EGWIILV+GVHEE QE+D+ NAFG++GEI
Sbjct: 62 EEKDSDRQRRLSSRDFESLGSDGRPGPQRSVEGWIILVSGVHEETQEEDITNAFGDFGEI 121
Query: 700 KNLHLNLDRRTGFVKGYALIEYERAEEAKNAIENLNGSELLTPNIYVDWAFSSGPI-NES 524
KNL+LNLDRR+G+VKGYALIEYE+ EEA++AI +NG+ELLT N+ VDWAFSSGP ES
Sbjct: 122 KNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAMNGAELLTQNVSVDWAFSSGPSGGES 181
Query: 523 IRRKNAR 503
RRKN+R
Sbjct: 182 YRRKNSR 188
>ref|NP_005096.1| RNA binding motif protein 8A; RNA binding motif protein 8; RNA
binding motif protein 8B; binder of OVCA1-1;
ribonucleoprotein RBM8 [Homo sapiens]
gi|27693451|ref|XP_215637.1| similar to RNA-binding
protein 8 (RNA binding motif protein 8)
(Ribonucleoprotein RBM8) (RNA-binding protein Y14)
[Rattus norvegicus] gi|10720244|sp|Q9Y5S9|RB8A_HUMAN
RNA-binding protein 8A (RNA binding motif protein 8A)
(Ribonucleoprotein RBM8A) (RNA-binding protein Y14)
(Binder of OVCA1-1) (BOV-1) gi|4455129|gb|AAD21089.1|
ribonucleoprotein RBM8 [Homo sapiens]
gi|6841450|gb|AAF29078.1|AF161463_1 HSPC114 [Homo
sapiens] gi|11034805|gb|AAG27091.1|AF299118_1 RNA-binding
protein Y14 [Homo sapiens]
gi|16589052|gb|AAL26999.1|AF403012_1 ribonucleoprotein
RBM8 [Homo sapiens] gi|16877694|gb|AAH17088.1|AAH17088
Unknown (protein for MGC:9713) [Homo sapiens]
gi|26350107|dbj|BAC38693.1| unnamed protein product [Mus
musculus]
Length = 174
Score = 158 bits (399), Expect = 2e-37
Identities = 90/180 (50%), Positives = 108/180 (60%), Gaps = 1/180 (0%)
Frame = -2
Query: 1000 EDGAPDADASPPHPKLKSAITSGAAPSLSAPKKTKGRGFRQETDTNRNNRLSGSDFDSLT 821
ED A D D KLK KK KGRGF E + R D+DS+
Sbjct: 13 EDFAMDEDGDESIHKLKEKA-----------KKRKGRGFGSEEGSRARMR---EDYDSVE 58
Query: 820 TEGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYAL 644
+G PGPQRS+EGWI+ VTGVHEEA E+D+ + F EYGEIKN+HLNLDRRTG++KGY L
Sbjct: 59 QDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTL 118
Query: 643 IEYERAEEAKNAIENLNGSELLTPNIYVDWAFSSGPINESIRRKNARPTRDRRSRSPRRR 464
+EYE +EA+ A+E LNG +L+ I VDW F GP K R RRSRSP RR
Sbjct: 119 VEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGP------PKGKRRGGRRRSRSPDRR 172
>gb|AAG27092.1|AF299119_1 RNA-binding protein Y14 [Xenopus laevis]
Length = 174
Score = 158 bits (399), Expect = 2e-37
Identities = 90/180 (50%), Positives = 109/180 (60%), Gaps = 1/180 (0%)
Frame = -2
Query: 1000 EDGAPDADASPPHPKLKSAITSGAAPSLSAPKKTKGRGFRQETDTNRNNRLSGSDFDSLT 821
ED A D D KLK KK KGRGF + T R +DS+
Sbjct: 13 EDFAMDEDGDDSIHKLKEKA-----------KKRKGRGFGADEGTKTRIR---EVYDSVE 58
Query: 820 TEGG-PGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEYGEIKNLHLNLDRRTGFVKGYAL 644
+G PGPQRS+EGWI+ VTGVHEEA E+D+ + FGE+GEIKN+HLNLDRRTGF+KGYAL
Sbjct: 59 QDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFGEFGEIKNIHLNLDRRTGFLKGYAL 118
Query: 643 IEYERAEEAKNAIENLNGSELLTPNIYVDWAFSSGPINESIRRKNARPTRDRRSRSPRRR 464
+EYE +EA A+E LNG +L+ + VDW F GP K R + RRSRSP RR
Sbjct: 119 VEYETYKEALAAMEGLNGQDLMGQPVSVDWGFVRGP------PKGKRRSGRRRSRSPERR 172
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,012,067,421
Number of Sequences: 1393205
Number of extensions: 24774343
Number of successful extensions: 140030
Number of sequences better than 10.0: 1781
Number of HSP's better than 10.0 without gapping: 97340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130948
length of database: 448,689,247
effective HSP length: 125
effective length of database: 274,538,622
effective search space used: 66712885146
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
