Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015119A_C01 KMC015119A_c01
(288 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ZP_00104953.1| hypothetical protein [Prochlorococcus marinus ... 34 0.45
ref|NP_703683.1| ATP dependent RNA helicase, putative; putative ... 33 1.0
ref|XP_219181.1| similar to olfactory receptor MOR31-10 [Mus mus... 31 5.0
ref|XP_145804.1| similar to olfactory receptor MOR31-10 [Mus mus... 31 5.0
ref|XP_145798.1| similar to olfactory receptor MOR31-10 [Mus mus... 31 5.0
>gb|ZP_00104953.1| hypothetical protein [Prochlorococcus marinus subsp. pastoris str.
CCMP1378]
Length = 264
Score = 34.3 bits (77), Expect = 0.45
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -3
Query: 250 SFDYSTPHFFSLYFPLPFSITVPPSIFLISLVIWGV 143
SF +S FFS++ P+ F T+P +FL ++W +
Sbjct: 199 SFSFSLRIFFSIFVPIAFITTIPSEVFLGIALLWEI 234
>ref|NP_703683.1| ATP dependent RNA helicase, putative; putative ATP dependent RNA
helicase [Plasmodium falciparum 3D7]
gi|23498344|emb|CAD50295.1| ATP dependent RNA helicase,
putative; putative ATP dependent RNA helicase
[Plasmodium falciparum 3D7]
Length = 1350
Score = 33.1 bits (74), Expect = 1.0
Identities = 15/27 (55%), Positives = 18/27 (66%)
Frame = +1
Query: 196 KKEEENREKKNGVYYNQNSQITSQNNS 276
K EE+ +EKKN + N N ITS NNS
Sbjct: 24 KDEEQQQEKKNHIIQNDNEIITSTNNS 50
>ref|XP_219181.1| similar to olfactory receptor MOR31-10 [Mus musculus] [Rattus
norvegicus]
Length = 280
Score = 30.8 bits (68), Expect = 5.0
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -2
Query: 257 ICEF*L*YTPFFFSLFSSSFFHHSSPLY 174
+C L YTP FFS F+ F HS PL+
Sbjct: 210 VCVILLFYTPAFFSFFAHRFGGHSIPLH 237
>ref|XP_145804.1| similar to olfactory receptor MOR31-10 [Mus musculus]
Length = 173
Score = 30.8 bits (68), Expect = 5.0
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -2
Query: 257 ICEF*L*YTPFFFSLFSSSFFHHSSPLY 174
+C L YTP FFS F+ F HS PL+
Sbjct: 103 VCVILLFYTPAFFSFFAHRFGGHSIPLH 130
>ref|XP_145798.1| similar to olfactory receptor MOR31-10 [Mus musculus]
gi|22129183|ref|NP_667052.1| olfactory receptor MOR31-10
[Mus musculus] gi|18479802|gb|AAL60915.1| olfactory
receptor MOR31-10 [Mus musculus]
Length = 318
Score = 30.8 bits (68), Expect = 5.0
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -2
Query: 257 ICEF*L*YTPFFFSLFSSSFFHHSSPLY 174
+C L YTP FFS F+ F HS PL+
Sbjct: 251 VCVILLFYTPAFFSFFAHRFGGHSIPLH 278
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 260,772,429
Number of Sequences: 1393205
Number of extensions: 5505372
Number of successful extensions: 22881
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 22201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22853
length of database: 448,689,247
effective HSP length: 71
effective length of database: 349,771,692
effective search space used: 8394520608
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
