Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015096A_C01 KMC015096A_c01
(418 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200604.1| GTP binding protein-like; protein id: At5g57960... 55 3e-07
ref|NP_009888.1| Protein required for cell viability; Ycl041cp [... 32 1.4
ref|NP_703289.1| hypothetical protein [Plasmodium falciparum 3D7... 32 1.9
ref|NP_494284.1| Putative cytoplasmic protein family member, nem... 32 2.4
ref|NP_704040.1| hypothetical protein [Plasmodium falciparum 3D7... 31 4.1
>ref|NP_200604.1| GTP binding protein-like; protein id: At5g57960.1 [Arabidopsis
thaliana] gi|9758365|dbj|BAB08866.1| GTP binding
protein-like [Arabidopsis thaliana]
Length = 540
Score = 54.7 bits (130), Expect = 3e-07
Identities = 24/35 (68%), Positives = 30/35 (85%)
Frame = -1
Query: 418 QVGMVEKTEYTEQGTYFKAHVPLRFAKLLTPMRQM 314
+VGMV++TEYTE GT +AHVPLRFA+LL PMR +
Sbjct: 496 KVGMVKETEYTENGTLIRAHVPLRFAQLLKPMRHL 530
>ref|NP_009888.1| Protein required for cell viability; Ycl041cp [Saccharomyces
cerevisiae] gi|140375|sp|P25571|YCE1_YEAST HYPOTHETICAL
19.1 KD PROTEIN IN PDI1-GLK1 INTERGENIC REGION
gi|83160|pir||S19370 probable membrane protein YCL041c -
yeast (Saccharomyces cerevisiae) gi|5322|emb|CAA42374.1|
hypothetical protein [Saccharomyces cerevisiae]
Length = 164
Score = 32.3 bits (72), Expect = 1.4
Identities = 15/35 (42%), Positives = 20/35 (56%)
Frame = +2
Query: 125 HTYIYVQLYETCYAASYYFSFPSPMTSNIKDAKLY 229
HTYIY+ +Y CYA + + + N K AKLY
Sbjct: 93 HTYIYIYIYIFCYACIFLLQ-AACLIGNFKAAKLY 126
>ref|NP_703289.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23510661|emb|CAD49046.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1152
Score = 32.0 bits (71), Expect = 1.9
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = -1
Query: 295 HKHINFLLHFHNFLPLGNVENVI*FCILYV*SHG*GKRKIVACSITCLIKLYIYV 131
+++ NFL+ F NFL +ENV C+ ++ H G+ K LI L +Y+
Sbjct: 479 YRYTNFLIPFKNFLISKTLENVEMVCVTFLSIHKFGREKYPDIYGFFLIILILYI 533
>ref|NP_494284.1| Putative cytoplasmic protein family member, nematode specific
[Caenorhabditis elegans] gi|7504095|pir||T32386
hypothetical protein F53G2.1 - Caenorhabditis elegans
gi|2429486|gb|AAB71019.1| Hypothetical protein F53G2.1
[Caenorhabditis elegans]
Length = 714
Score = 31.6 bits (70), Expect = 2.4
Identities = 22/87 (25%), Positives = 40/87 (45%), Gaps = 12/87 (13%)
Frame = +1
Query: 40 DMLWQTAVALPSFNRVSIFKGLRMTPMVTYIHICTTL*--DMLCC-------KLLFFVSL 192
+ +W A+ N +S++ T ++T +H+CTT+ D L L F++L
Sbjct: 434 EKIWLAAMGFLQKNHISVYC---QTGVLTVLHMCTTIMTQDQLSLFAEKRPHMLQLFLAL 490
Query: 193 THDF---KHKGCKTILHFLHYLRAKNY 264
+H + I+H +HYL +Y
Sbjct: 491 NWSLNKKEHNLTRCIMHIIHYLTKSSY 517
>ref|NP_704040.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23498778|emb|CAD50848.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 1192
Score = 30.8 bits (68), Expect = 4.1
Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Frame = -3
Query: 227 IVLHPLCLKSWVRETKNSSLQHNMSHKVVHICMYVTIG-----VILKPLKMET 84
I +HP CLK + KN + ++ H + +CMY IG +++ LK++T
Sbjct: 428 IFIHPSCLKDVIENFKNINSSVHIKH-IKDMCMYELIGPKSFDLLINILKVKT 479
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 352,273,357
Number of Sequences: 1393205
Number of extensions: 7004134
Number of successful extensions: 16604
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 16169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16597
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 6956733048
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
