Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015071A_C01 KMC015071A_c01
(544 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK44147.2|AF370332_1 putative harpin-induced protein [Arabid... 38 0.091
ref|NP_196250.1| harpin-induced protein-like; protein id: At5g06... 38 0.091
gb|AAF88023.1|AF264699_1 NDR1/HIN1-like protein 3 [Arabidopsis t... 38 0.091
ref|NP_181089.1| similar to harpin-induced protein hin1 from tob... 35 0.77
dbj|BAB86894.1| syringolide-induced protein B13-1-9 [Glycine max] 34 1.3
>gb|AAK44147.2|AF370332_1 putative harpin-induced protein [Arabidopsis thaliana]
Length = 223
Score = 37.7 bits (86), Expect = 0.091
Identities = 21/49 (42%), Positives = 26/49 (52%)
Frame = -1
Query: 544 RFRLGDFQFEGPSARVKCKLKVPPSSNGDGKTVAVVADAFHPTKCDVDF 398
RF+ G + ++KC LKVP +SN V F PTKCDVDF
Sbjct: 181 RFKFGLIKSWRFKPKIKCDLKVPLTSNSTSGFV------FQPTKCDVDF 223
>ref|NP_196250.1| harpin-induced protein-like; protein id: At5g06320.1, supported by
cDNA: gi_9502175 [Arabidopsis thaliana]
gi|9758412|dbj|BAB08954.1| harpin-induced protein-like
[Arabidopsis thaliana] gi|24030178|gb|AAN41271.1|
putative harpin-induced protein [Arabidopsis thaliana]
Length = 231
Score = 37.7 bits (86), Expect = 0.091
Identities = 21/49 (42%), Positives = 26/49 (52%)
Frame = -1
Query: 544 RFRLGDFQFEGPSARVKCKLKVPPSSNGDGKTVAVVADAFHPTKCDVDF 398
RF+ G + ++KC LKVP +SN V F PTKCDVDF
Sbjct: 189 RFKFGLIKSWRFKPKIKCDLKVPLTSNSTSGFV------FQPTKCDVDF 231
>gb|AAF88023.1|AF264699_1 NDR1/HIN1-like protein 3 [Arabidopsis thaliana]
gi|24417302|gb|AAN60261.1| unknown [Arabidopsis
thaliana]
Length = 230
Score = 37.7 bits (86), Expect = 0.091
Identities = 21/49 (42%), Positives = 26/49 (52%)
Frame = -1
Query: 544 RFRLGDFQFEGPSARVKCKLKVPPSSNGDGKTVAVVADAFHPTKCDVDF 398
RF+ G + ++KC LKVP +SN V F PTKCDVDF
Sbjct: 188 RFKFGLIKSWRFKPKIKCDLKVPLTSNSTSGFV------FQPTKCDVDF 230
>ref|NP_181089.1| similar to harpin-induced protein hin1 from tobacco; protein id:
At2g35460.1 [Arabidopsis thaliana]
gi|25354697|pir||H84768 hypothetical protein At2g35460
[imported] - Arabidopsis thaliana
gi|3608142|gb|AAC36175.1| similar to harpin-induced
protein hin1 from tobacco [Arabidopsis thaliana]
Length = 238
Score = 34.7 bits (78), Expect = 0.77
Identities = 18/48 (37%), Positives = 24/48 (49%)
Frame = -1
Query: 544 RFRLGDFQFEGPSARVKCKLKVPPSSNGDGKTVAVVADAFHPTKCDVD 401
RF+ G ++KC LKVP S++ + FHPTKC VD
Sbjct: 195 RFKFGFLNSWAVRPKIKCHLKVPLSTSSSDERFQ-----FHPTKCHVD 237
>dbj|BAB86894.1| syringolide-induced protein B13-1-9 [Glycine max]
Length = 203
Score = 33.9 bits (76), Expect = 1.3
Identities = 21/49 (42%), Positives = 23/49 (46%)
Frame = -1
Query: 544 RFRLGDFQFEGPSARVKCKLKVPPSSNGDGKTVAVVADAFHPTKCDVDF 398
RFRLGD +VKC LKVP S +G F TKC V F
Sbjct: 162 RFRLGDSISGNLKPKVKCHLKVPFSKSG-------TFTLFETTKCSVHF 203
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 474,924,580
Number of Sequences: 1393205
Number of extensions: 10204689
Number of successful extensions: 21921
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 21237
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21898
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
