Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015069A_C01 KMC015069A_c01
(564 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB08971.1| gb|AAF23841.1~gene_id:K15O15.3~similar to unknow... 35 0.49
ref|NP_198517.1| putative serine-rich protein; protein id: At5g3... 35 0.49
gb|EAA16671.1| rpl2 [Plasmodium yoelii yoelii] 33 3.2
gb|ZP_00039043.1| hypothetical protein [Xylella fastidiosa Dixon] 32 4.2
ref|NP_572467.1| CG1632-PA [Drosophila melanogaster] gi|22831940... 32 5.4
>dbj|BAB08971.1| gb|AAF23841.1~gene_id:K15O15.3~similar to unknown protein
[Arabidopsis thaliana] gi|26449396|dbj|BAC41825.1|
putative serine-rich protein [Arabidopsis thaliana]
gi|29028998|gb|AAO64878.1| At5g37010 [Arabidopsis
thaliana]
Length = 637
Score = 35.4 bits (80), Expect = 0.49
Identities = 18/34 (52%), Positives = 25/34 (72%)
Frame = -1
Query: 540 SSSSWEPSSADSTDCWTSRLNNSRDECQKCPLGL 439
SSSSWEP+SA+STD + R +N + E + PLG+
Sbjct: 558 SSSSWEPNSAESTDRVSMRSSN-KQERDRSPLGV 590
>ref|NP_198517.1| putative serine-rich protein; protein id: At5g37010.1 [Arabidopsis
thaliana]
Length = 702
Score = 35.4 bits (80), Expect = 0.49
Identities = 18/34 (52%), Positives = 25/34 (72%)
Frame = -1
Query: 540 SSSSWEPSSADSTDCWTSRLNNSRDECQKCPLGL 439
SSSSWEP+SA+STD + R +N + E + PLG+
Sbjct: 577 SSSSWEPNSAESTDRVSMRSSN-KQERDRSPLGV 609
>gb|EAA16671.1| rpl2 [Plasmodium yoelii yoelii]
Length = 246
Score = 32.7 bits (73), Expect = 3.2
Identities = 16/45 (35%), Positives = 23/45 (50%), Gaps = 5/45 (11%)
Frame = -2
Query: 419 YDMCEARKKKTLNSERRDCDHQHSGGIGRGRLG-----SNKGLHN 300
Y++ +K K + CDH H GG G+ +G S KGLH+
Sbjct: 194 YNVFYNKKPKVRGKAKNVCDHPHGGGKGKTGIGRKYPCSKKGLHS 238
>gb|ZP_00039043.1| hypothetical protein [Xylella fastidiosa Dixon]
Length = 550
Score = 32.3 bits (72), Expect = 4.2
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +3
Query: 429 NYHPSLRDISDTHLWSCSILRSSNLLSLQNWVPM 530
NY P LRDIS L + R S +LSL+ W P+
Sbjct: 139 NYFPELRDISGMVLVMDMLPRISRVLSLETWSPL 172
>ref|NP_572467.1| CG1632-PA [Drosophila melanogaster] gi|22831940|gb|AAF46357.2|
CG1632-PA [Drosophila melanogaster]
Length = 1056
Score = 32.0 bits (71), Expect = 5.4
Identities = 16/62 (25%), Positives = 33/62 (52%), Gaps = 8/62 (12%)
Frame = +2
Query: 386 MSSSSLLHTYHMTNKLPPKPKGHF*HSSLELFNLEVQQS--------VESAELGSHEEEE 541
+SS LL +H PP+ + HF + ++++ +L ++++ + S+ LG H+E
Sbjct: 312 VSSGDLLALFHEEMTQPPQQRRHFANMTVDVASLSIKETTGLIEEPIMSSSPLGGHDETT 371
Query: 542 TP 547
P
Sbjct: 372 EP 373
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 481,559,407
Number of Sequences: 1393205
Number of extensions: 10086390
Number of successful extensions: 24254
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 23511
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24242
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
