Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015068A_C01 KMC015068A_c01
(476 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA98173.1| RAB8B [Lotus japonicus] 194 3e-49
pir||S57471 GTP-binding protein GTP6 - garden pea gi|871510|emb|... 188 3e-47
dbj|BAB84326.1| ras-related protein RAB8-5 [Nicotiana tabacum] 183 7e-46
dbj|BAB84322.1| ras-related protein RAB8-1 [Nicotiana tabacum] 182 1e-45
dbj|BAB84324.1| ras-related protein RAB8-3 [Nicotiana tabacum] 181 5e-45
>emb|CAA98173.1| RAB8B [Lotus japonicus]
Length = 187
Score = 194 bits (494), Expect = 3e-49
Identities = 98/99 (98%), Positives = 98/99 (98%)
Frame = -3
Query: 474 SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVDEVFFSIARDI 295
SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVDEVFFSIARDI
Sbjct: 89 SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVDEVFFSIARDI 148
Query: 294 KQRVADNDSKAEPQTLKINQPDQGAGSAQAAQKSACCGS 178
KQRVADNDSKAEPQTLKINQPDQGAGSAQAA KSACCGS
Sbjct: 149 KQRVADNDSKAEPQTLKINQPDQGAGSAQAAPKSACCGS 187
>pir||S57471 GTP-binding protein GTP6 - garden pea gi|871510|emb|CAA90080.1|
small GTP-binding protein [Pisum sativum]
Length = 216
Score = 188 bits (477), Expect = 3e-47
Identities = 93/99 (93%), Positives = 96/99 (96%)
Frame = -3
Query: 474 SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVDEVFFSIARDI 295
SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN+NVDEVFFSIARDI
Sbjct: 118 SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNMNVDEVFFSIARDI 177
Query: 294 KQRVADNDSKAEPQTLKINQPDQGAGSAQAAQKSACCGS 178
KQR+A+ DSK EPQTLKINQPDQGAGSAQA QKSACCGS
Sbjct: 178 KQRLAETDSKTEPQTLKINQPDQGAGSAQATQKSACCGS 216
>dbj|BAB84326.1| ras-related protein RAB8-5 [Nicotiana tabacum]
Length = 216
Score = 183 bits (465), Expect = 7e-46
Identities = 89/99 (89%), Positives = 98/99 (98%)
Frame = -3
Query: 474 SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVDEVFFSIARDI 295
SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN+NV+EVFFSIARDI
Sbjct: 118 SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNMNVEEVFFSIARDI 177
Query: 294 KQRVADNDSKAEPQTLKINQPDQGAGSAQAAQKSACCGS 178
KQR+A++DSKAEPQT++INQPDQ AG+AQ+AQKSACCGS
Sbjct: 178 KQRLAESDSKAEPQTIRINQPDQAAGAAQSAQKSACCGS 216
>dbj|BAB84322.1| ras-related protein RAB8-1 [Nicotiana tabacum]
Length = 216
Score = 182 bits (463), Expect = 1e-45
Identities = 88/99 (88%), Positives = 97/99 (97%)
Frame = -3
Query: 474 SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVDEVFFSIARDI 295
SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN+NV+EVFFSIARDI
Sbjct: 118 SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNMNVEEVFFSIARDI 177
Query: 294 KQRVADNDSKAEPQTLKINQPDQGAGSAQAAQKSACCGS 178
KQR+A++D++AEPQT++INQPDQGAG AQ AQKSACCGS
Sbjct: 178 KQRLAESDNRAEPQTIRINQPDQGAGGAQTAQKSACCGS 216
>dbj|BAB84324.1| ras-related protein RAB8-3 [Nicotiana tabacum]
Length = 216
Score = 181 bits (458), Expect = 5e-45
Identities = 87/99 (87%), Positives = 97/99 (97%)
Frame = -3
Query: 474 SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVDEVFFSIARDI 295
SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTN+NV+EVFFSIARDI
Sbjct: 118 SDNVNKILVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNMNVEEVFFSIARDI 177
Query: 294 KQRVADNDSKAEPQTLKINQPDQGAGSAQAAQKSACCGS 178
KQR+A++DSKAEPQT++INQPDQ AG++Q+ QKSACCGS
Sbjct: 178 KQRLAESDSKAEPQTIRINQPDQAAGASQSVQKSACCGS 216
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 389,340,742
Number of Sequences: 1393205
Number of extensions: 7535178
Number of successful extensions: 18887
Number of sequences better than 10.0: 1182
Number of HSP's better than 10.0 without gapping: 18130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18461
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13106568690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
