Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015057A_C01 KMC015057A_c01
(557 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA99426.1| P0710E05.11 [Oryza sativa (japonica cultivar-gro... 56 3e-07
ref|NP_188270.1| putative calmodulin-binding protein; protein id... 31 9.0
gb|AAB63628.1| hypothetical protein [Arabidopsis thaliana] 31 9.0
>dbj|BAA99426.1| P0710E05.11 [Oryza sativa (japonica cultivar-group)]
Length = 465
Score = 55.8 bits (133), Expect = 3e-07
Identities = 26/57 (45%), Positives = 44/57 (76%), Gaps = 1/57 (1%)
Frame = -3
Query: 555 GPKKRLSLTDL-MESRSSFSGVRMQRSCSQIQEAISFKNDVMSKLEKSTEFGRETDK 388
G +KR+ L+++ +E+R+S SGV MQRSC+++QEA +FK V+S+ ++S+E E D+
Sbjct: 401 GARKRVPLSEVTLEARASLSGVGMQRSCNRVQEAFNFKTAVLSRFDRSSEPAAERDR 457
>ref|NP_188270.1| putative calmodulin-binding protein; protein id: At3g16490.1
[Arabidopsis thaliana] gi|9279648|dbj|BAB01148.1|
gene_id:MDC8.12~unknown protein [Arabidopsis thaliana]
Length = 389
Score = 31.2 bits (69), Expect = 9.0
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = -3
Query: 549 KKRLSLTDLMESRSSFSGVRMQRSCSQIQ 463
+KRLSL ++M +RSS SGVRM + Q Q
Sbjct: 333 RKRLSLDEIMAARSSVSGVRMVQPQPQPQ 361
>gb|AAB63628.1| hypothetical protein [Arabidopsis thaliana]
Length = 207
Score = 31.2 bits (69), Expect = 9.0
Identities = 16/29 (55%), Positives = 21/29 (72%)
Frame = -3
Query: 549 KKRLSLTDLMESRSSFSGVRMQRSCSQIQ 463
+KRLSL ++M +RSS SGVRM + Q Q
Sbjct: 151 RKRLSLDEIMAARSSVSGVRMVQPQPQPQ 179
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 436,361,270
Number of Sequences: 1393205
Number of extensions: 8592451
Number of successful extensions: 17378
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 17049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17375
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
