Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015041A_C01 KMC015041A_c01
(506 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA07230.1| putative cytidine deaminase; putative deoxycytid... 186 1e-46
gb|AAN40022.1| putative cytidine deaminase [Zea mays] 181 4e-45
gb|AAL67435.1|AF458409_1 deoxycytidine deaminase [Brassica olera... 175 3e-43
ref|NP_198157.1| putative cytidine deaminase - like; protein id:... 173 9e-43
ref|NP_187181.1| unknown protein; protein id: At3g05300.1 [Arabi... 125 3e-28
>emb|CAA07230.1| putative cytidine deaminase; putative deoxycytidylate deaminase
[Cicer arietinum]
Length = 186
Score = 186 bits (473), Expect = 1e-46
Identities = 92/94 (97%), Positives = 92/94 (97%)
Frame = -2
Query: 505 KLNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTG 326
KL QIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTG
Sbjct: 93 KLKQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTG 152
Query: 325 FYQKAQLEIKRADGNGALIAEEVFQKTKEKFQMY 224
FYQKAQLEIKRADGN ALIAEEVFQKTKEKFQMY
Sbjct: 153 FYQKAQLEIKRADGNEALIAEEVFQKTKEKFQMY 186
>gb|AAN40022.1| putative cytidine deaminase [Zea mays]
Length = 180
Score = 181 bits (459), Expect = 4e-45
Identities = 86/94 (91%), Positives = 92/94 (97%)
Frame = -2
Query: 505 KLNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTG 326
KL +IELSDCEIYASCEPCPMCFGA+HLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTG
Sbjct: 87 KLGKIELSDCEIYASCEPCPMCFGALHLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTG 146
Query: 325 FYQKAQLEIKRADGNGALIAEEVFQKTKEKFQMY 224
FYQKA +EIK+ADGNGALIAE+VF+KTKEKFQMY
Sbjct: 147 FYQKANMEIKKADGNGALIAEQVFEKTKEKFQMY 180
>gb|AAL67435.1|AF458409_1 deoxycytidine deaminase [Brassica oleracea]
Length = 185
Score = 175 bits (443), Expect = 3e-43
Identities = 83/94 (88%), Positives = 90/94 (95%)
Frame = -2
Query: 505 KLNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTG 326
KLNQIELS+CEIYASCEPCPMCFGAIHLSR+KRLVYGAKAEAAIAIGFDDFIADALRGTG
Sbjct: 92 KLNQIELSECEIYASCEPCPMCFGAIHLSRLKRLVYGAKAEAAIAIGFDDFIADALRGTG 151
Query: 325 FYQKAQLEIKRADGNGALIAEEVFQKTKEKFQMY 224
YQK+ LEIK+ADGNGA IAE+VFQ TKEKF++Y
Sbjct: 152 VYQKSNLEIKKADGNGAAIAEQVFQNTKEKFRLY 185
>ref|NP_198157.1| putative cytidine deaminase - like; protein id: At5g28050.1,
supported by cDNA: 37242., supported by cDNA:
gi_14532497 [Arabidopsis thaliana]
gi|14532498|gb|AAK63977.1| AT5g28050/F15F15_120
[Arabidopsis thaliana] gi|22137296|gb|AAM91493.1|
AT5g28050/F15F15_120 [Arabidopsis thaliana]
Length = 185
Score = 173 bits (439), Expect = 9e-43
Identities = 82/94 (87%), Positives = 90/94 (95%)
Frame = -2
Query: 505 KLNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTG 326
KLN+IELS+CEIYASCEPCPMCFGAIHLSR+KRLVYGAKAEAAIAIGFDDFIADALRGTG
Sbjct: 92 KLNKIELSECEIYASCEPCPMCFGAIHLSRLKRLVYGAKAEAAIAIGFDDFIADALRGTG 151
Query: 325 FYQKAQLEIKRADGNGALIAEEVFQKTKEKFQMY 224
YQK+ LEIK+ADGNGA IAE+VFQ TKEKF++Y
Sbjct: 152 VYQKSSLEIKKADGNGAAIAEQVFQNTKEKFRLY 185
>ref|NP_187181.1| unknown protein; protein id: At3g05300.1 [Arabidopsis thaliana]
gi|6729040|gb|AAF27036.1|AC009177_26 unknown protein
[Arabidopsis thaliana]
Length = 113
Score = 125 bits (314), Expect = 3e-28
Identities = 61/93 (65%), Positives = 73/93 (77%)
Frame = -2
Query: 505 KLNQIELSDCEIYASCEPCPMCFGAIHLSRIKRLVYGAKAEAAIAIGFDDFIADALRGTG 326
KLN+I+LS+CEIYASCEPCPMCFGAIHLSR+KRLVY AK EAA+AIGF+ +AD +RG G
Sbjct: 23 KLNEIKLSECEIYASCEPCPMCFGAIHLSRLKRLVYEAKVEAALAIGFNRILADGVRGVG 82
Query: 325 FYQKAQLEIKRADGNGALIAEEVFQKTKEKFQM 227
Y + LEI + D IAE+VFQ TK KF +
Sbjct: 83 CYHNSNLEITKLD---LSIAEQVFQNTKGKFSL 112
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 416,698,718
Number of Sequences: 1393205
Number of extensions: 8433233
Number of successful extensions: 19971
Number of sequences better than 10.0: 190
Number of HSP's better than 10.0 without gapping: 19572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19965
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
