Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015040A_C01 KMC015040A_c01
(559 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM66057.1| unknown [Arabidopsis thaliana] 154 7e-37
ref|NP_566621.1| expressed protein; protein id: At3g18940.1, sup... 154 7e-37
gb|AAF65184.1|AF068295_1 HDCMC29P [Homo sapiens] 44 0.001
ref|NP_064617.2| hepatocellular carcinoma susceptibility protein... 44 0.001
gb|AAF87314.1|AF168712_1 x 003 protein [Homo sapiens] 44 0.001
>gb|AAM66057.1| unknown [Arabidopsis thaliana]
Length = 281
Score = 154 bits (389), Expect = 7e-37
Identities = 72/131 (54%), Positives = 93/131 (70%), Gaps = 1/131 (0%)
Frame = -2
Query: 558 DENCESLGWKKLQEYDPSQKHWKFLSDLAEGNATREDIISEEDELEEEDYYASFPFAPLY 379
D++CE LG+ +L EYD + WK+LS + E N+ E + EDELE+ DYY S PFA L+
Sbjct: 151 DDHCERLGFGRLHEYDSEGRCWKYLSSVFEKNSVEELALPSEDELEDIDYYPSLPFAALF 210
Query: 378 PFLKPKGLKVTCLLCYCSEGDNISDAFQLADAVCKLLRLTPPT-SGIEGNQWRVPLSWMT 202
K +GLK+TCLLCYCSEGDNI +AF LA+A KL+ LTP G EG +W++P SW +
Sbjct: 211 SAFKARGLKMTCLLCYCSEGDNIPEAFLLAEASSKLMGLTPDKFHGEEGGKWQIPYSWKS 270
Query: 201 VYGPPPDMSMF 169
+YG PPDMSMF
Sbjct: 271 MYGAPPDMSMF 281
>ref|NP_566621.1| expressed protein; protein id: At3g18940.1, supported by cDNA: 75.
[Arabidopsis thaliana] gi|9280311|dbj|BAB01690.1|
gene_id:K13E13.3~unknown protein [Arabidopsis thaliana]
Length = 281
Score = 154 bits (389), Expect = 7e-37
Identities = 72/131 (54%), Positives = 93/131 (70%), Gaps = 1/131 (0%)
Frame = -2
Query: 558 DENCESLGWKKLQEYDPSQKHWKFLSDLAEGNATREDIISEEDELEEEDYYASFPFAPLY 379
D++CE LG+ +L EYD + WK+LS + E N+ E + EDELE+ DYY S PFA L+
Sbjct: 151 DDHCERLGFGRLHEYDSEGRCWKYLSSVFEKNSVEELALPSEDELEDIDYYPSLPFAALF 210
Query: 378 PFLKPKGLKVTCLLCYCSEGDNISDAFQLADAVCKLLRLTPPT-SGIEGNQWRVPLSWMT 202
K +GLK+TCLLCYCSEGDNI +AF LA+A KL+ LTP G EG +W++P SW +
Sbjct: 211 SAFKARGLKMTCLLCYCSEGDNIPEAFLLAEASSKLMGLTPDKFHGEEGGKWQIPYSWKS 270
Query: 201 VYGPPPDMSMF 169
+YG PPDMSMF
Sbjct: 271 MYGAPPDMSMF 281
>gb|AAF65184.1|AF068295_1 HDCMC29P [Homo sapiens]
Length = 256
Score = 43.9 bits (102), Expect = 0.001
Identities = 22/67 (32%), Positives = 38/67 (55%), Gaps = 3/67 (4%)
Frame = -2
Query: 384 LYPFLKPKGLKVTCLLCYCSEGDNISDAFQLADAVCKLLRLTPPTSG---IEGNQWRVPL 214
LY K +++ LL + SEGDNI DA L + + + L++ P S + ++W++P
Sbjct: 182 LYDESCSKEIQMAVLLKFVSEGDNIPDALGLVEYLNEWLQILKPLSDDPTVSASRWKIPS 241
Query: 213 SWMTVYG 193
SW ++G
Sbjct: 242 SWRLLFG 248
>ref|NP_064617.2| hepatocellular carcinoma susceptibility protein; x 003 protein;
HDCMC29P; HSPC260; likely ortholog of mouse CD40
ligand-activated specific transcript 3 (Clast3) [Homo
sapiens] gi|14589886|gb|AAK69439.2| hepatocellular
carcinoma susceptibility protein [Homo sapiens]
gi|15426502|gb|AAH13356.1|AAH13356 Unknown (protein for
MGC:15092) [Homo sapiens]
Length = 264
Score = 43.9 bits (102), Expect = 0.001
Identities = 22/67 (32%), Positives = 38/67 (55%), Gaps = 3/67 (4%)
Frame = -2
Query: 384 LYPFLKPKGLKVTCLLCYCSEGDNISDAFQLADAVCKLLRLTPPTSG---IEGNQWRVPL 214
LY K +++ LL + SEGDNI DA L + + + L++ P S + ++W++P
Sbjct: 190 LYDESCSKEIQMAVLLKFVSEGDNIPDALGLVEYLNEWLQILKPLSDDPTVSASRWKIPS 249
Query: 213 SWMTVYG 193
SW ++G
Sbjct: 250 SWRLLFG 256
>gb|AAF87314.1|AF168712_1 x 003 protein [Homo sapiens]
Length = 224
Score = 43.9 bits (102), Expect = 0.001
Identities = 22/67 (32%), Positives = 38/67 (55%), Gaps = 3/67 (4%)
Frame = -2
Query: 384 LYPFLKPKGLKVTCLLCYCSEGDNISDAFQLADAVCKLLRLTPPTSG---IEGNQWRVPL 214
LY K +++ LL + SEGDNI DA L + + + L++ P S + ++W++P
Sbjct: 150 LYDESCSKEIQMAVLLKFVSEGDNIPDALGLVEYLNEWLQILKPLSDDPTVSASRWKIPS 209
Query: 213 SWMTVYG 193
SW ++G
Sbjct: 210 SWRLLFG 216
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 459,772,333
Number of Sequences: 1393205
Number of extensions: 9532693
Number of successful extensions: 27080
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 22212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26004
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
