Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015030A_C01 KMC015030A_c01
(491 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC20221.1| ribosomal protein L2 [Glycine max] 257 4e-68
gb|AAF85800.1| 60S ribosomal protein L2 [Nicotiana tabacum] 251 3e-66
sp|P29766|RL2_LYCES 60S RIBOSOMAL PROTEIN L2 (L8) (RIBOSOMAL PRO... 250 7e-66
ref|NP_195336.1| putative ribosomal protein L8; protein id: At4g... 245 2e-64
sp|P25998|RL2_TOBAC 60S RIBOSOMAL PROTEIN L2 gi|7440614|pir||S22... 245 2e-64
>emb|CAC20221.1| ribosomal protein L2 [Glycine max]
Length = 260
Score = 257 bits (657), Expect = 4e-68
Identities = 123/126 (97%), Positives = 125/126 (98%)
Frame = -1
Query: 491 IVISHNPDNDTSRIKLPSGAKKIVPSDCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRN 312
IVISHNPDNDTSRIKLPSG+KKIVPSDCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRN
Sbjct: 135 IVISHNPDNDTSRIKLPSGSKKIVPSDCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRN 194
Query: 311 CWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAAKRTGRLRGQAAATA 132
CWPKVRGVAMNPVEHPHGGGNHQHIGHASTV RDAPPGQKVGLIAA+RTGRLRGQAAATA
Sbjct: 195 CWPKVRGVAMNPVEHPHGGGNHQHIGHASTVSRDAPPGQKVGLIAARRTGRLRGQAAATA 254
Query: 131 AKADKA 114
AKADKA
Sbjct: 255 AKADKA 260
>gb|AAF85800.1| 60S ribosomal protein L2 [Nicotiana tabacum]
Length = 174
Score = 251 bits (641), Expect = 3e-66
Identities = 119/126 (94%), Positives = 124/126 (97%)
Frame = -1
Query: 491 IVISHNPDNDTSRIKLPSGAKKIVPSDCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRN 312
IVISHNPDN T+RIKLPSG+KKIVPS CRAMIGQVAGGGRTEKP+LKAGNAYHK+RVKRN
Sbjct: 49 IVISHNPDNGTTRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRN 108
Query: 311 CWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAAKRTGRLRGQAAATA 132
CWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAA+RTGRLRGQAAATA
Sbjct: 109 CWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRLRGQAAATA 168
Query: 131 AKADKA 114
AKADKA
Sbjct: 169 AKADKA 174
>sp|P29766|RL2_LYCES 60S RIBOSOMAL PROTEIN L2 (L8) (RIBOSOMAL PROTEIN TL2)
gi|71078|pir||R5TOL8 ribosomal protein L8, cytosolic -
tomato gi|19343|emb|CAA45863.1| ribosomal protein L2
[Lycopersicon esculentum]
Length = 260
Score = 250 bits (638), Expect = 7e-66
Identities = 118/126 (93%), Positives = 123/126 (96%)
Frame = -1
Query: 491 IVISHNPDNDTSRIKLPSGAKKIVPSDCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRN 312
IVISHNPDN T+R+KLPSGAKKIVPS CRAMIGQVAGGGRTEKP+LKAGNAYHK+RVKRN
Sbjct: 135 IVISHNPDNGTTRVKLPSGAKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRN 194
Query: 311 CWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAAKRTGRLRGQAAATA 132
CWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAA+RTGRLRGQA ATA
Sbjct: 195 CWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAARRTGRLRGQARATA 254
Query: 131 AKADKA 114
AKADKA
Sbjct: 255 AKADKA 260
>ref|NP_195336.1| putative ribosomal protein L8; protein id: At4g36130.1, supported
by cDNA: gi_13605568, supported by cDNA: gi_13605872,
supported by cDNA: gi_16323279 [Arabidopsis thaliana]
gi|7440636|pir||T04582 ribosomal protein L8, cytosolic -
Arabidopsis thaliana gi|2961372|emb|CAA18119.1| putative
ribosomal protein L8 [Arabidopsis thaliana]
gi|3036817|emb|CAA18507.1| ribosomal protein L2
[Arabidopsis thaliana] gi|7270565|emb|CAB81522.1|
putative ribosomal protein L8 [Arabidopsis thaliana]
gi|13605569|gb|AAK32778.1|AF361610_1 AT4g36130/F23E13_20
[Arabidopsis thaliana]
gi|13605873|gb|AAK32922.1|AF367335_1 AT4g36130/F23E13_20
[Arabidopsis thaliana] gi|16323280|gb|AAL15395.1|
AT4g36130/F23E13_20 [Arabidopsis thaliana]
Length = 258
Score = 245 bits (626), Expect = 2e-64
Identities = 115/124 (92%), Positives = 122/124 (97%)
Frame = -1
Query: 491 IVISHNPDNDTSRIKLPSGAKKIVPSDCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRN 312
IVI+HNPDNDTSRIKLPSG+KKIVPS CRAMIGQVAGGGRTEKP+LKAGNAYHK+RVKRN
Sbjct: 135 IVIAHNPDNDTSRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRN 194
Query: 311 CWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAAKRTGRLRGQAAATA 132
CWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPG+KVGLIAA+RTGRLRGQAAA A
Sbjct: 195 CWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGKKVGLIAARRTGRLRGQAAALA 254
Query: 131 AKAD 120
+KAD
Sbjct: 255 SKAD 258
>sp|P25998|RL2_TOBAC 60S RIBOSOMAL PROTEIN L2 gi|7440614|pir||S22641 ribosomal protein
L2, cytosolic - common tobacco gi|20001|emb|CAA44362.1|
60S ribosomal protein L2 [Nicotiana tabacum]
Length = 260
Score = 245 bits (626), Expect = 2e-64
Identities = 116/126 (92%), Positives = 121/126 (95%)
Frame = -1
Query: 491 IVISHNPDNDTSRIKLPSGAKKIVPSDCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRN 312
IVISHNPDN T+RIKLPSG+KKIVPS CR MIGQVAGGGRTEKP+LKAGNAYHK+RVKRN
Sbjct: 135 IVISHNPDNGTTRIKLPSGSKKIVPSGCRRMIGQVAGGGRTEKPMLKAGNAYHKYRVKRN 194
Query: 311 CWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLIAAKRTGRLRGQAAATA 132
CWPKVRGVAMNPVEHPHGGGNHQHIGHASTV RDAPPGQKVGLIA +RTGRLRGQAAATA
Sbjct: 195 CWPKVRGVAMNPVEHPHGGGNHQHIGHASTVARDAPPGQKVGLIAGRRTGRLRGQAAATA 254
Query: 131 AKADKA 114
AKADKA
Sbjct: 255 AKADKA 260
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 435,090,218
Number of Sequences: 1393205
Number of extensions: 9406249
Number of successful extensions: 32636
Number of sequences better than 10.0: 360
Number of HSP's better than 10.0 without gapping: 30686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32230
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14203329973
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
