Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015020A_C01 KMC015020A_c01
(574 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL87170.1|AF480496_24 putative AAA-type ATPase [Oryza sativa... 123 1e-27
ref|NP_565435.1| putative AAA-type ATPase; protein id: At2g18330... 120 2e-26
pir||A84563 probable AAA-type ATPase [imported] - Arabidopsis th... 120 2e-26
ref|NP_195376.1| ATPase-like protein; protein id: At4g36580.1 [A... 110 1e-23
ref|NP_186956.1| putative 26S proteosome regulatory subunit; pro... 110 2e-23
>gb|AAL87170.1|AF480496_24 putative AAA-type ATPase [Oryza sativa (japonica cultivar-group)]
Length = 587
Score = 123 bits (309), Expect = 1e-27
Identities = 59/78 (75%), Positives = 71/78 (90%)
Frame = -1
Query: 553 LLKKQPKQITIKDLSEDVLKEAAKKTEGFSGREIAKLMASVQAAVYGRPDCVLDSQLLKE 374
LLKKQ ++I +KD+S+D+L+EAA+K GFSGREIAKLMASVQAAVYGRPDCVLD QLL E
Sbjct: 507 LLKKQRQKIQVKDISDDLLREAARKINGFSGREIAKLMASVQAAVYGRPDCVLDPQLLME 566
Query: 373 IVDYKVVEHHQRLQLASE 320
+V+YKV EHHQR++LASE
Sbjct: 567 VVEYKVAEHHQRIKLASE 584
>ref|NP_565435.1| putative AAA-type ATPase; protein id: At2g18330.1, supported by
cDNA: gi_15450827, supported by cDNA: gi_20259833
[Arabidopsis thaliana] gi|15450828|gb|AAK96685.1|
putative AAA-type ATPase [Arabidopsis thaliana]
gi|20197813|gb|AAD15504.2| putative AAA-type ATPase
[Arabidopsis thaliana] gi|20259834|gb|AAM13264.1|
putative AAA-type ATPase [Arabidopsis thaliana]
Length = 636
Score = 120 bits (300), Expect = 2e-26
Identities = 60/82 (73%), Positives = 73/82 (88%), Gaps = 1/82 (1%)
Frame = -1
Query: 556 LLLKKQPKQITIK-DLSEDVLKEAAKKTEGFSGREIAKLMASVQAAVYGRPDCVLDSQLL 380
L KK+ ++ITI+ DL++ V+KEAAKKTEGFSGREIAKL+A VQAAVYGR DCVLDSQL
Sbjct: 551 LFKKKKSQKITIEGDLTDQVIKEAAKKTEGFSGREIAKLVAGVQAAVYGRQDCVLDSQLF 610
Query: 379 KEIVDYKVVEHHQRLQLASEGG 314
+EIVDYK+ EHHQR++LA+EGG
Sbjct: 611 EEIVDYKIEEHHQRIRLATEGG 632
>pir||A84563 probable AAA-type ATPase [imported] - Arabidopsis thaliana
Length = 703
Score = 120 bits (300), Expect = 2e-26
Identities = 60/82 (73%), Positives = 73/82 (88%), Gaps = 1/82 (1%)
Frame = -1
Query: 556 LLLKKQPKQITIK-DLSEDVLKEAAKKTEGFSGREIAKLMASVQAAVYGRPDCVLDSQLL 380
L KK+ ++ITI+ DL++ V+KEAAKKTEGFSGREIAKL+A VQAAVYGR DCVLDSQL
Sbjct: 618 LFKKKKSQKITIEGDLTDQVIKEAAKKTEGFSGREIAKLVAGVQAAVYGRQDCVLDSQLF 677
Query: 379 KEIVDYKVVEHHQRLQLASEGG 314
+EIVDYK+ EHHQR++LA+EGG
Sbjct: 678 EEIVDYKIEEHHQRIRLATEGG 699
>ref|NP_195376.1| ATPase-like protein; protein id: At4g36580.1 [Arabidopsis thaliana]
gi|25407741|pir||H85431 ATPase-like protein [imported] -
Arabidopsis thaliana gi|4006905|emb|CAB16835.1|
ATPase-like protein [Arabidopsis thaliana]
gi|7270606|emb|CAB80324.1| ATPase-like protein
[Arabidopsis thaliana]
Length = 620
Score = 110 bits (276), Expect = 1e-23
Identities = 57/80 (71%), Positives = 67/80 (83%), Gaps = 1/80 (1%)
Frame = -1
Query: 553 LLKKQPKQITIK-DLSEDVLKEAAKKTEGFSGREIAKLMASVQAAVYGRPDCVLDSQLLK 377
L KK ++IT++ DL++ V+ EAAKKTEGFSGREIAKL+A VQA VYGR DCVLDSQL K
Sbjct: 534 LFKKLSQKITVEEDLTDKVISEAAKKTEGFSGREIAKLVAGVQAGVYGRADCVLDSQLFK 593
Query: 376 EIVDYKVVEHHQRLQLASEG 317
EIV+YKV EHH+R LASEG
Sbjct: 594 EIVEYKVEEHHRRHMLASEG 613
>ref|NP_186956.1| putative 26S proteosome regulatory subunit; protein id: At3g03060.1
[Arabidopsis thaliana]
gi|6714430|gb|AAF26118.1|AC012328_21 putative 26S
proteosome regulatory subunit [Arabidopsis thaliana]
Length = 639
Score = 110 bits (274), Expect = 2e-23
Identities = 58/84 (69%), Positives = 68/84 (80%), Gaps = 3/84 (3%)
Frame = -1
Query: 568 SKGGL---LLKKQPKQITIKDLSEDVLKEAAKKTEGFSGREIAKLMASVQAAVYGRPDCV 398
SK GL L KK+ ++I IK ++E++LKEAA KTEGFSGREIAKLMASVQAAVYG DCV
Sbjct: 551 SKPGLFDRLFKKEQQKIEIKGVTEELLKEAAAKTEGFSGREIAKLMASVQAAVYGSEDCV 610
Query: 397 LDSQLLKEIVDYKVVEHHQRLQLA 326
LDS L +E+VDYKV EH QR +LA
Sbjct: 611 LDSMLFREVVDYKVAEHQQRRKLA 634
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 484,817,402
Number of Sequences: 1393205
Number of extensions: 10055909
Number of successful extensions: 27441
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 25229
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27250
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
