Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC015007A_C01 KMC015007A_c01
(544 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566314.1| expressed protein; protein id: At3g07640.1, sup... 86 4e-16
gb|AAF13082.1|AC009176_9 hypothetical protein [Arabidopsis thali... 86 4e-16
ref|XP_157908.1| hypothetical protein XP_157908 [Mus musculus] 33 2.9
ref|NP_267586.1| prophage pi3 protein 57, cI-like repressor [Lac... 32 3.8
ref|NP_076638.1| repressor [Bacteriophage bIL286] gi|12830936|gb... 32 3.8
>ref|NP_566314.1| expressed protein; protein id: At3g07640.1, supported by cDNA:
9503. [Arabidopsis thaliana] gi|21618049|gb|AAM67099.1|
unknown [Arabidopsis thaliana]
Length = 241
Score = 85.5 bits (210), Expect = 4e-16
Identities = 41/75 (54%), Positives = 53/75 (70%), Gaps = 1/75 (1%)
Frame = -3
Query: 536 LLHFVRVMKLPTFFLIGQTSQHLDNKSTKQR-EIIHEIGEVLASSTGLQFSEDRVIWNPE 360
LLH RV +LPT LIGQ S L +K+ + ++IHE GE++AS TGL FS DR+ W+
Sbjct: 167 LLHLARVKRLPTAILIGQRSNSLTHKALDEELQVIHETGELVASWTGLSFSRDRIKWSAS 226
Query: 359 KTSRETKEPWRALYG 315
KTS+E + PWRALYG
Sbjct: 227 KTSKEEESPWRALYG 241
>gb|AAF13082.1|AC009176_9 hypothetical protein [Arabidopsis thaliana]
Length = 155
Score = 85.5 bits (210), Expect = 4e-16
Identities = 41/75 (54%), Positives = 53/75 (70%), Gaps = 1/75 (1%)
Frame = -3
Query: 536 LLHFVRVMKLPTFFLIGQTSQHLDNKSTKQR-EIIHEIGEVLASSTGLQFSEDRVIWNPE 360
LLH RV +LPT LIGQ S L +K+ + ++IHE GE++AS TGL FS DR+ W+
Sbjct: 81 LLHLARVKRLPTAILIGQRSNSLTHKALDEELQVIHETGELVASWTGLSFSRDRIKWSAS 140
Query: 359 KTSRETKEPWRALYG 315
KTS+E + PWRALYG
Sbjct: 141 KTSKEEESPWRALYG 155
>ref|XP_157908.1| hypothetical protein XP_157908 [Mus musculus]
Length = 151
Score = 32.7 bits (73), Expect = 2.9
Identities = 17/52 (32%), Positives = 28/52 (53%)
Frame = -3
Query: 497 FLIGQTSQHLDNKSTKQREIIHEIGEVLASSTGLQFSEDRVIWNPEKTSRET 342
FL+G TSQH D+ + ++ G V+ ++T +Q + N K +RET
Sbjct: 18 FLLGGTSQHEDDTNIDNKDAFSGRGGVMGNATLIQGDDKEPKGNGSKAARET 69
>ref|NP_267586.1| prophage pi3 protein 57, cI-like repressor [Lactococcus lactis
subsp. lactis] gi|25373539|pir||F86803 prophage pi3
protein 57, cI-like repressor [imported] - Lactococcus
lactis subsp. lactis (strain IL1403)
gi|12724419|gb|AAK05528.1|AE006373_7 prophage pi3
protein 57, cI-like repressor [Lactococcus lactis subsp.
lactis]
Length = 173
Score = 32.3 bits (72), Expect = 3.8
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = -3
Query: 527 FVRVMKLPTFFLIGQTSQHLDNKSTKQREIIHEIGEV 417
F RV+ + T +L+G + + NK+ KQ I+ EI ++
Sbjct: 54 FARVLGISTEYLLGISKDEMPNKTKKQSPIVEEINQI 90
>ref|NP_076638.1| repressor [Bacteriophage bIL286]
gi|12830936|gb|AAK08291.1|AF323669_4 repressor
[bacteriophage bIL286]
Length = 173
Score = 32.3 bits (72), Expect = 3.8
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = -3
Query: 527 FVRVMKLPTFFLIGQTSQHLDNKSTKQREIIHEIGEV 417
F RV+ + T +L+G + + NK+ KQ I+ EI ++
Sbjct: 54 FARVLGISTEYLLGISKDEMPNKTKKQSPIVEEINQI 90
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 460,069,315
Number of Sequences: 1393205
Number of extensions: 9804374
Number of successful extensions: 21819
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 21304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21809
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
