Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014962A_C01 KMC014962A_c01
(515 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO13463.1| Hypothetical protein [Oryza sativa (japonica cult... 113 1e-24
ref|NP_680180.1| unknown protein; protein id: At5g21920.1 [Arabi... 98 5e-20
ref|NP_486101.1| hypothetical protein [Nostoc sp. PCC 7120] gi|2... 56 2e-07
ref|NP_566307.1| expressed protein; protein id: At3g07430.1, sup... 54 8e-07
gb|AAM66973.1| unknown [Arabidopsis thaliana] 54 8e-07
>gb|AAO13463.1| Hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 157
Score = 113 bits (283), Expect = 1e-24
Identities = 56/85 (65%), Positives = 69/85 (80%)
Frame = -2
Query: 514 PAIVGPLSTICDPYLNLFRGLIPPLGGTLDLSPILAFLVLNAFTSASAALPAELPVTQQS 335
PAIV PLSTICDPYLN+FRG+IPPLGGTLDLSPILAFLVLNA +S +AALPAELP
Sbjct: 63 PAIVAPLSTICDPYLNIFRGIIPPLGGTLDLSPILAFLVLNALSSTAAALPAELP-DPAP 121
Query: 334 EQGVAATLQSTDITSSQKKWMKRLQ 260
AT S+ +T++++KWM+R++
Sbjct: 122 PTSRGATSSSSVLTANRRKWMRRIR 146
>ref|NP_680180.1| unknown protein; protein id: At5g21920.1 [Arabidopsis thaliana]
gi|13374851|emb|CAC34485.1| putative protein
[Arabidopsis thaliana] gi|26451921|dbj|BAC43053.1|
unknown protein [Arabidopsis thaliana]
gi|28950811|gb|AAO63329.1| At5g21920 [Arabidopsis
thaliana] gi|29294067|gb|AAO73904.1| expressed protein
[Arabidopsis thaliana]
Length = 251
Score = 98.2 bits (243), Expect = 5e-20
Identities = 53/83 (63%), Positives = 61/83 (72%)
Frame = -2
Query: 514 PAIVGPLSTICDPYLNLFRGLIPPLGGTLDLSPILAFLVLNAFTSASAALPAELPVTQQS 335
PAIV PLST+CDPYLN+FRG IPPLGG LDLSPILAFLVLNAFTS++ ALP ELP S
Sbjct: 163 PAIVNPLSTLCDPYLNIFRGFIPPLGG-LDLSPILAFLVLNAFTSSAMALPCELP----S 217
Query: 334 EQGVAATLQSTDITSSQKKWMKR 266
G + SS+ KW++R
Sbjct: 218 ADGAVSP------ASSETKWVRR 234
>ref|NP_486101.1| hypothetical protein [Nostoc sp. PCC 7120] gi|25305475|pir||AG2063
hypothetical protein asl2061 [imported] - Nostoc sp.
(strain PCC 7120) gi|17131152|dbj|BAB73760.1|
ORF_ID:asl2061~hypothetical protein [Nostoc sp. PCC
7120]
Length = 92
Score = 56.2 bits (134), Expect = 2e-07
Identities = 28/35 (80%), Positives = 30/35 (85%)
Frame = -2
Query: 496 LSTICDPYLNLFRGLIPPLGGTLDLSPILAFLVLN 392
LS I DPYLNLFR +IPPLGG +D SPILAFLVLN
Sbjct: 41 LSQITDPYLNLFRSIIPPLGG-MDFSPILAFLVLN 74
>ref|NP_566307.1| expressed protein; protein id: At3g07430.1, supported by cDNA:
8898., supported by cDNA: gi_20466761 [Arabidopsis
thaliana] gi|6041841|gb|AAF02150.1|AC009853_10 unknown
protein [Arabidopsis thaliana]
gi|20466762|gb|AAM20698.1| unknown protein [Arabidopsis
thaliana]
Length = 232
Score = 54.3 bits (129), Expect = 8e-07
Identities = 27/43 (62%), Positives = 31/43 (71%), Gaps = 3/43 (6%)
Frame = -2
Query: 499 PLSTI---CDPYLNLFRGLIPPLGGTLDLSPILAFLVLNAFTS 380
PLS I CDPYLNLFR +IPP+ TLD+SP+LAF VL S
Sbjct: 183 PLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGS 225
>gb|AAM66973.1| unknown [Arabidopsis thaliana]
Length = 234
Score = 54.3 bits (129), Expect = 8e-07
Identities = 27/43 (62%), Positives = 31/43 (71%), Gaps = 3/43 (6%)
Frame = -2
Query: 499 PLSTI---CDPYLNLFRGLIPPLGGTLDLSPILAFLVLNAFTS 380
PLS I CDPYLNLFR +IPP+ TLD+SP+LAF VL S
Sbjct: 185 PLSAIRDLCDPYLNLFRNIIPPIFDTLDVSPLLAFAVLGTLGS 227
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 434,711,802
Number of Sequences: 1393205
Number of extensions: 8683015
Number of successful extensions: 22411
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 21729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22390
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
