Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014959A_C01 KMC014959A_c01
(726 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_177392.1| unknown protein; protein id: At1g72480.1 [Arabi... 154 1e-36
ref|NP_178217.1| unknown protein; protein id: At2g01070.1 [Arabi... 95 1e-18
dbj|BAC16500.1| membrane protein PTM1-like [Oryza sativa (japoni... 94 3e-18
dbj|BAC42366.1| unknown protein [Arabidopsis thaliana] 91 2e-17
ref|NP_172567.1| membrane protein PTM1 precursor isolog; protein... 55 8e-07
>ref|NP_177392.1| unknown protein; protein id: At1g72480.1 [Arabidopsis thaliana]
gi|25406184|pir||A96749 unknown protein T10D10.5
[imported] - Arabidopsis thaliana
gi|12325283|gb|AAG52590.1|AC016529_21 unknown protein;
24890-26925 [Arabidopsis thaliana]
Length = 509
Score = 154 bits (389), Expect = 1e-36
Identities = 73/117 (62%), Positives = 91/117 (77%), Gaps = 2/117 (1%)
Frame = -2
Query: 725 VIVSVGWICYELHFKSNDVYNERCQNAWIIPAFWQVLSYSLLCVICALWAPSQNSTRYAY 546
++VS+GWICYEL+FKS DVYNE QNAWIIPAFWQ+LS+SLL VIC+LWAPSQNSTRYA+
Sbjct: 393 ILVSLGWICYELYFKSKDVYNEHWQNAWIIPAFWQLLSFSLLIVICSLWAPSQNSTRYAF 452
Query: 545 RGDDG--SDEFDRDETTLTLIKPASISAKDVRIVPDARPVQGGNGVSNDDLEEDKRE 381
G G S EF++D+ TLTLIKP+ I + +V+ + + R + G DLEEDKRE
Sbjct: 453 SGSSGDTSAEFEKDDYTLTLIKPSPIPSHEVKNLSETRLLPADEGEPEKDLEEDKRE 509
>ref|NP_178217.1| unknown protein; protein id: At2g01070.1 [Arabidopsis thaliana]
gi|25410876|pir||C84420 hypothetical protein At2g01070
[imported] - Arabidopsis thaliana
gi|6598622|gb|AAF18655.1| unknown protein [Arabidopsis
thaliana]
Length = 467
Score = 94.7 bits (234), Expect = 1e-18
Identities = 53/125 (42%), Positives = 71/125 (56%), Gaps = 10/125 (8%)
Frame = -2
Query: 725 VIVSVGWICYELHFKSNDVYNERCQNAWIIPAFWQVLSYSLLCVICALWAPSQNS----- 561
V+ SV WI YE++FK+ D +NER Q AW I AFW V+++ LLC+IC LW PSQNS
Sbjct: 352 VVASVAWIVYEVYFKATDPFNERWQTAWTITAFWDVIAFLLLCIICYLWTPSQNSQRDAN 411
Query: 560 -----TRYAYRGDDGSDEFDRDETTLTLIKPASISAKDVRIVPDARPVQGGNGVSNDDLE 396
RYAY GD DE + + +LT K D+ +V + + +D+E
Sbjct: 412 MKLMMDRYAYSGD--VDEENEEAQSLTGGKQDG----DISLVKQEKNAESDR---EEDVE 462
Query: 395 EDKRE 381
EDKRE
Sbjct: 463 EDKRE 467
>dbj|BAC16500.1| membrane protein PTM1-like [Oryza sativa (japonica cultivar-group)]
Length = 582
Score = 93.6 bits (231), Expect = 3e-18
Identities = 44/94 (46%), Positives = 62/94 (65%), Gaps = 6/94 (6%)
Frame = -2
Query: 725 VIVSVGWICYELHFKSNDVYNERCQNAWIIPAFWQVLSYSLLCVICALWAPSQNSTRYAY 546
V +S+GWI +E+HFK+ D +NER + AW+IPA W+++S+ LLC IC LW PSQNS R+AY
Sbjct: 458 VALSLGWITFEVHFKTTDEHNERWRVAWVIPAVWELISFFLLCTICILWTPSQNSMRFAY 517
Query: 545 RGD------DGSDEFDRDETTLTLIKPASISAKD 462
+ + +DE D E T LI+ +S D
Sbjct: 518 SREECEDDTEHNDEDDDVEDTRPLIRAGPLSYVD 551
>dbj|BAC42366.1| unknown protein [Arabidopsis thaliana]
Length = 513
Score = 90.5 bits (223), Expect = 2e-17
Identities = 50/115 (43%), Positives = 67/115 (57%)
Frame = -2
Query: 725 VIVSVGWICYELHFKSNDVYNERCQNAWIIPAFWQVLSYSLLCVICALWAPSQNSTRYAY 546
V++S+ WI +EL+F D E + AWIIPAFW +LSY LL VIC LWAPS N TRY+Y
Sbjct: 409 VLLSIAWIGFELYFNGTDPLIELWRMAWIIPAFWNLLSYGLLAVICILWAPSNNPTRYSY 468
Query: 545 RGDDGSDEFDRDETTLTLIKPASISAKDVRIVPDARPVQGGNGVSNDDLEEDKRE 381
+ G DEF+ + +LT ++ D + G+ DD+EE KRE
Sbjct: 469 LAETG-DEFEEEGISLT--------GSGIKSTEDVERNELLFGLP-DDVEEGKRE 513
>ref|NP_172567.1| membrane protein PTM1 precursor isolog; protein id: At1g10980.1
[Arabidopsis thaliana] gi|25402634|pir||G86243
hypothetical protein [imported] - Arabidopsis thaliana
gi|1931644|gb|AAB65479.1| membrane protein PTM1
precursor isolog; 58165-60455 [Arabidopsis thaliana]
Length = 516
Score = 55.5 bits (132), Expect = 8e-07
Identities = 24/73 (32%), Positives = 41/73 (55%)
Frame = -2
Query: 725 VIVSVGWICYELHFKSNDVYNERCQNAWIIPAFWQVLSYSLLCVICALWAPSQNSTRYAY 546
V++S WI E++ S+ ++ + WI+P W +LSY++L +IC W PS+ RY Y
Sbjct: 408 VVLSFAWIYVEVYLYSS--LSQFWKVKWIVPTLWYILSYAMLVLICLFWPPSEKPMRYLY 465
Query: 545 RGDDGSDEFDRDE 507
D + + D+
Sbjct: 466 VADMEEETEEEDD 478
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 589,609,551
Number of Sequences: 1393205
Number of extensions: 12453802
Number of successful extensions: 37528
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 34068
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36920
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34062062287
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
