Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014948A_C01 KMC014948A_c01
(594 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P22177|PCNA_SOYBN PROLIFERATING CELL NUCLEAR ANTIGEN (PCNA) (... 265 4e-70
gb|AAG24908.1|AF305075_1 proliferating cell nuclear antigen [Nic... 261 4e-69
sp|Q00268|PCNA_DAUCA PROLIFERATING CELL NUCLEAR ANTIGEN (PCNA) (... 261 5e-69
sp|O82797|PCNA_TOBAC Proliferating cell nuclear antigen (PCNA) g... 261 6e-69
pir||S20592 proliferating cell nuclear antigen (clone 4.10) - ca... 259 2e-68
>sp|P22177|PCNA_SOYBN PROLIFERATING CELL NUCLEAR ANTIGEN (PCNA) (CYCLIN)
gi|99946|pir||S14414 proliferating cell nuclear antigen
- soybean (fragment) gi|18726|emb|CAA39239.1|
proliferating cell nuclear antigen [Glycine max]
Length = 236
Score = 265 bits (676), Expect = 4e-70
Identities = 133/139 (95%), Positives = 139/139 (99%)
Frame = -1
Query: 594 IPEAEYHAIVRMPSAEFARICKDLSSIGDTVVISVTKEGVKFSTKGDIGTANIVCRQNTS 415
IPEAEYHAIV+MPS+EFARICKDLSSIGDTVVISVTKEGVKFSTKGDIGTANIVCRQNTS
Sbjct: 98 IPEAEYHAIVKMPSSEFARICKDLSSIGDTVVISVTKEGVKFSTKGDIGTANIVCRQNTS 157
Query: 414 VDKPEEATVIEMNEPVSLTFALRYMNSFTKATPLSSTVTISLSSELPVVVEYKIAEMGYV 235
VDKPEEATVIEMNEPVSLTFALRYMNSFTKATPLS+TVTISLS+ELPVVVEYKIAEMGYV
Sbjct: 158 VDKPEEATVIEMNEPVSLTFALRYMNSFTKATPLSNTVTISLSNELPVVVEYKIAEMGYV 217
Query: 234 RFYLAPKIEEEEEETKPQV 178
RFYLAPKIEE+EE+TKPQV
Sbjct: 218 RFYLAPKIEEDEEDTKPQV 236
>gb|AAG24908.1|AF305075_1 proliferating cell nuclear antigen [Nicotiana benthamiana]
Length = 264
Score = 261 bits (668), Expect = 4e-69
Identities = 130/137 (94%), Positives = 137/137 (99%)
Frame = -1
Query: 594 IPEAEYHAIVRMPSAEFARICKDLSSIGDTVVISVTKEGVKFSTKGDIGTANIVCRQNTS 415
IPEAEYHAIVRMPSAEFARICKDLSSIGDTVVISVTKEGVKFST+GDIGTAN+VCRQNT+
Sbjct: 128 IPEAEYHAIVRMPSAEFARICKDLSSIGDTVVISVTKEGVKFSTRGDIGTANVVCRQNTT 187
Query: 414 VDKPEEATVIEMNEPVSLTFALRYMNSFTKATPLSSTVTISLSSELPVVVEYKIAEMGYV 235
VDKPEEATVIEMNEPVSLTFALRY+NSFTKATPLS+TVTISLSSELPVVVEYKIAEMGY+
Sbjct: 188 VDKPEEATVIEMNEPVSLTFALRYLNSFTKATPLSNTVTISLSSELPVVVEYKIAEMGYI 247
Query: 234 RFYLAPKIEEEEEETKP 184
RFYLAPKIEE+EEETKP
Sbjct: 248 RFYLAPKIEEDEEETKP 264
>sp|Q00268|PCNA_DAUCA PROLIFERATING CELL NUCLEAR ANTIGEN (PCNA) (CYCLIN)
Length = 264
Score = 261 bits (667), Expect = 5e-69
Identities = 131/137 (95%), Positives = 137/137 (99%)
Frame = -1
Query: 594 IPEAEYHAIVRMPSAEFARICKDLSSIGDTVVISVTKEGVKFSTKGDIGTANIVCRQNTS 415
IPEAEYHAIVRMPSAEFARICKDLSSIGDTVVISVTKEGVKFST+GDIGTANIVCRQNT+
Sbjct: 128 IPEAEYHAIVRMPSAEFARICKDLSSIGDTVVISVTKEGVKFSTRGDIGTANIVCRQNTT 187
Query: 414 VDKPEEATVIEMNEPVSLTFALRYMNSFTKATPLSSTVTISLSSELPVVVEYKIAEMGYV 235
VDKPEEATVIEMNEPVSLTFALRYMNSFTKA+PLSSTVTISLSSELPVVVEYKIAEMGY+
Sbjct: 188 VDKPEEATVIEMNEPVSLTFALRYMNSFTKASPLSSTVTISLSSELPVVVEYKIAEMGYI 247
Query: 234 RFYLAPKIEEEEEETKP 184
RFYLAPKIEEEE+E+KP
Sbjct: 248 RFYLAPKIEEEEDESKP 264
>sp|O82797|PCNA_TOBAC Proliferating cell nuclear antigen (PCNA) gi|3366661|gb|AAC27992.1|
proliferating cell nuclear antigen [Nicotiana tabacum]
gi|3514105|gb|AAC34126.1| proliferating cell nuclear
antigen [Nicotiana tabacum] gi|4586306|dbj|BAA76349.1|
proliferating cell nuclear antigen [Nicotiana tabacum]
Length = 264
Score = 261 bits (666), Expect = 6e-69
Identities = 130/137 (94%), Positives = 137/137 (99%)
Frame = -1
Query: 594 IPEAEYHAIVRMPSAEFARICKDLSSIGDTVVISVTKEGVKFSTKGDIGTANIVCRQNTS 415
IPEAEYHAIVRMPSAEF+RICKDLSSIGDTVVISVTKEGVKFST+GDIGTANIVCRQNT+
Sbjct: 128 IPEAEYHAIVRMPSAEFSRICKDLSSIGDTVVISVTKEGVKFSTRGDIGTANIVCRQNTT 187
Query: 414 VDKPEEATVIEMNEPVSLTFALRYMNSFTKATPLSSTVTISLSSELPVVVEYKIAEMGYV 235
VDKPEEATVIEMNEPVSLTFALRY+NSFTKATPLS+TVTISLSSELPVVVEYKIAEMGY+
Sbjct: 188 VDKPEEATVIEMNEPVSLTFALRYLNSFTKATPLSNTVTISLSSELPVVVEYKIAEMGYI 247
Query: 234 RFYLAPKIEEEEEETKP 184
RFYLAPKIEE+EEETKP
Sbjct: 248 RFYLAPKIEEDEEETKP 264
>pir||S20592 proliferating cell nuclear antigen (clone 4.10) - carrot
Length = 264
Score = 259 bits (662), Expect = 2e-68
Identities = 130/137 (94%), Positives = 136/137 (98%)
Frame = -1
Query: 594 IPEAEYHAIVRMPSAEFARICKDLSSIGDTVVISVTKEGVKFSTKGDIGTANIVCRQNTS 415
IPEAEYHAIVRMPSAEFARICKDLSSIGDTVVISVTKEGVKFST+GDIGTANIVCRQNT+
Sbjct: 128 IPEAEYHAIVRMPSAEFARICKDLSSIGDTVVISVTKEGVKFSTRGDIGTANIVCRQNTT 187
Query: 414 VDKPEEATVIEMNEPVSLTFALRYMNSFTKATPLSSTVTISLSSELPVVVEYKIAEMGYV 235
VDKPEEATVIEMNEPVSLTFALRYMNSFTK +PLSSTVTISLSSELPVVVEYKIAEMGY+
Sbjct: 188 VDKPEEATVIEMNEPVSLTFALRYMNSFTKLSPLSSTVTISLSSELPVVVEYKIAEMGYI 247
Query: 234 RFYLAPKIEEEEEETKP 184
RFYLAPKIEEEE+E+KP
Sbjct: 248 RFYLAPKIEEEEDESKP 264
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 522,565,176
Number of Sequences: 1393205
Number of extensions: 11226104
Number of successful extensions: 35449
Number of sequences better than 10.0: 112
Number of HSP's better than 10.0 without gapping: 34468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35410
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
