Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014944A_C01 KMC014944A_c01
(404 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P28723|FTHS_SPIOL FORMATE--TETRAHYDROFOLATE LIGASE (FORMYLTET... 119 9e-27
ref|NP_564571.1| 10-formyltetrahydrofolate synthetase; protein i... 114 4e-25
gb|AAH45396.1| Similar to methylenetetrahydrofolate dehydrogenas... 107 4e-23
pir||A35367 methylenetetrahydrofolate dehydrogenase (NADP) (EC 1... 105 2e-22
sp|P11586|C1TC_HUMAN C-1-tetrahydrofolate synthase, cytoplasmic ... 103 4e-22
>sp|P28723|FTHS_SPIOL FORMATE--TETRAHYDROFOLATE LIGASE (FORMYLTETRAHYDROFOLATE
SYNTHETASE) (FHS) (FTHFS) gi|322401|pir||A43350
formate-tetrahydrofolate ligase (EC 6.3.4.3) - spinach
gi|170145|gb|AAA34046.1| 10-formyltetrahydrofolate
synthetase
Length = 637
Score = 119 bits (298), Expect = 9e-27
Identities = 57/61 (93%), Positives = 58/61 (94%)
Frame = -3
Query: 402 AAAKGAPSGFILPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYDIDLDTATGKVIGL 223
AA KGAPSGFILPIRDVR SIGAGFIYPLVGTMSTMPGLPTRPCF+DIDLDT TGKVIGL
Sbjct: 577 AAEKGAPSGFILPIRDVRGSIGAGFIYPLVGTMSTMPGLPTRPCFFDIDLDTTTGKVIGL 636
Query: 222 S 220
S
Sbjct: 637 S 637
>ref|NP_564571.1| 10-formyltetrahydrofolate synthetase; protein id: At1g50480.1,
supported by cDNA: gi_15451113, supported by cDNA:
gi_20148440, supported by cDNA: gi_5921662 [Arabidopsis
thaliana] gi|25293735|pir||C96541
10-formyltetrahydrofolate synthetase [imported] -
Arabidopsis thaliana gi|5921663|gb|AAD56290.1|AF162279_1
10-formyltetrahydrofolate synthetase [Arabidopsis
thaliana] gi|9454559|gb|AAF87882.1|AC012561_15
10-formyltetrahydrofolate synthetase [Arabidopsis
thaliana] gi|12322329|gb|AAG51185.1|AC079279_6
10-formyltetrahydrofolate synthetase [Arabidopsis
thaliana] gi|15451114|gb|AAK96828.1|
10-formyltetrahydrofolate synthetase [Arabidopsis
thaliana] gi|20148441|gb|AAM10111.1|
10-formyltetrahydrofolate synthetase [Arabidopsis
thaliana]
Length = 634
Score = 114 bits (284), Expect = 4e-25
Identities = 53/61 (86%), Positives = 57/61 (92%)
Frame = -3
Query: 402 AAAKGAPSGFILPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYDIDLDTATGKVIGL 223
A+ KGAPSGF+LPIRDVR SIGAGFIYPLVGTMSTMPGLPTRPCFY+ID+DT TGKV GL
Sbjct: 574 ASKKGAPSGFVLPIRDVRGSIGAGFIYPLVGTMSTMPGLPTRPCFYEIDIDTETGKVRGL 633
Query: 222 S 220
S
Sbjct: 634 S 634
>gb|AAH45396.1| Similar to methylenetetrahydrofolate dehydrogenase (NADP+ dependent),
methenyltetrahydrofolate cyclohydrolase,
formyltetrahydrofolate synthetase [Danio rerio]
Length = 934
Score = 107 bits (267), Expect = 4e-23
Identities = 47/60 (78%), Positives = 55/60 (91%)
Frame = -3
Query: 402 AAAKGAPSGFILPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYDIDLDTATGKVIGL 223
A KG P+GF+LPIRD+RAS+GAGF+YPLVGTM T+PGLPTRPCFYDIDLDT +G+VIGL
Sbjct: 874 AEKKGVPTGFVLPIRDIRASVGAGFLYPLVGTMPTIPGLPTRPCFYDIDLDTESGEVIGL 933
>pir||A35367 methylenetetrahydrofolate dehydrogenase (NADP) (EC 1.5.1.5) - rat
Length = 935
Score = 105 bits (261), Expect = 2e-22
Identities = 46/57 (80%), Positives = 53/57 (92%)
Frame = -3
Query: 393 KGAPSGFILPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYDIDLDTATGKVIGL 223
KG P+GF+LPIRD+RAS+GAGF+YPLVGTMSTMPGLPTRPCFYDIDLD T +V+GL
Sbjct: 878 KGVPTGFVLPIRDIRASVGAGFLYPLVGTMSTMPGLPTRPCFYDIDLDPETEQVMGL 934
>sp|P11586|C1TC_HUMAN C-1-tetrahydrofolate synthase, cytoplasmic (C1-THF synthase)
[Includes: Methylenetetrahydrofolate dehydrogenase ;
Methenyltetrahydrofolate cyclohydrolase ;
Formyltetrahydrofolate synthetase ] gi|88152|pir||A31903
methylenetetrahydrofolate dehydrogenase (NADP) (EC
1.5.1.5) - human gi|307178|gb|AAA59574.1| MDMCSF (EC
1.5.1.5; EC 3.5.4.9; EC 6.3.4.3)
Length = 935
Score = 103 bits (258), Expect = 4e-22
Identities = 47/57 (82%), Positives = 52/57 (90%)
Frame = -3
Query: 393 KGAPSGFILPIRDVRASIGAGFIYPLVGTMSTMPGLPTRPCFYDIDLDTATGKVIGL 223
KG P+GFILPIRD+RAS+GAGF+YPLVGTMSTMPGLPTRPCFYDIDLD T +V GL
Sbjct: 878 KGVPTGFILPIRDIRASVGAGFLYPLVGTMSTMPGLPTRPCFYDIDLDPETEQVNGL 934
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 359,947,033
Number of Sequences: 1393205
Number of extensions: 7533707
Number of successful extensions: 18300
Number of sequences better than 10.0: 104
Number of HSP's better than 10.0 without gapping: 17959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18293
length of database: 448,689,247
effective HSP length: 110
effective length of database: 295,436,697
effective search space used: 7090480728
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
