Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014926A_C01 KMC014926A_c01
(565 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD56235.1|AF183809_1 arabinogalactan protein Pop14A9 [Populu... 80 2e-14
gb|AAM62683.1| arabinogalactan protein-like [Arabidopsis thaliana] 76 3e-13
ref|NP_200857.1| fasciclin-like arabinogalactan-protein (FLA12);... 76 3e-13
gb|AAK95321.1|AF410335_1 AT5g60490/muf9_140 [Arabidopsis thalian... 76 3e-13
gb|AAM62616.1| arabinogalactan protein-like [Arabidopsis thaliana] 75 7e-13
>gb|AAD56235.1|AF183809_1 arabinogalactan protein Pop14A9 [Populus x canescens]
Length = 240
Score = 80.1 bits (196), Expect = 2e-14
Identities = 39/76 (51%), Positives = 51/76 (66%)
Frame = -1
Query: 562 ELNVTAYGNSVNISTGVVDVTITGIVYFDKTLAIYRVDKVLIPLDFKKPKPIAPAPALAK 383
ELNVT GNSVNI+TG+ + +++G +Y D LA+++VDKVL+PLD PKP PAPA K
Sbjct: 138 ELNVTTTGNSVNITTGLTNTSVSGTIYTDNQLAVHQVDKVLLPLDIFTPKPPTPAPAPEK 197
Query: 382 APKADKENSSAEDDDD 335
K K +S E D
Sbjct: 198 PKKRSKAAASPESPAD 213
>gb|AAM62683.1| arabinogalactan protein-like [Arabidopsis thaliana]
Length = 248
Score = 76.3 bits (186), Expect = 3e-13
Identities = 45/109 (41%), Positives = 66/109 (60%), Gaps = 2/109 (1%)
Frame = -1
Query: 565 FELNVTAYGNSVNISTGVVDVTITGIVYFDKTLAIYRVDKVLIPLDFKKPKPIAPAPALA 386
F LNVT GN+VNI++GV + T++G VY D LA+Y+VDKVL+P P+P APAPA +
Sbjct: 139 FPLNVTTSGNTVNITSGVTNTTVSGNVYSDGQLAVYQVDKVLLPQQVFDPRPPAPAPAPS 198
Query: 385 KAPKADKENSSAEDDDDQGQGTKNSSGANRLISSIRGTT--LVLSLVLA 245
+ K++ S DD ++S A R + S+ V+S++LA
Sbjct: 199 VSKSKKKKDDSDSSSDD---SPADASFALRNVGSVCDAVSFCVMSVMLA 244
>ref|NP_200857.1| fasciclin-like arabinogalactan-protein (FLA12); protein id:
At5g60490.1, supported by cDNA: 15239., supported by
cDNA: gi_15294287 [Arabidopsis thaliana]
gi|9757751|dbj|BAB08232.1| contains similarity to
surface protein~gene_id:MUF9.12 [Arabidopsis thaliana]
Length = 249
Score = 76.3 bits (186), Expect = 3e-13
Identities = 45/109 (41%), Positives = 66/109 (60%), Gaps = 2/109 (1%)
Frame = -1
Query: 565 FELNVTAYGNSVNISTGVVDVTITGIVYFDKTLAIYRVDKVLIPLDFKKPKPIAPAPALA 386
F LNVT GN+VNI++GV + T++G VY D LA+Y+VDKVL+P P+P APAPA +
Sbjct: 140 FPLNVTTSGNTVNITSGVTNTTVSGNVYSDGQLAVYQVDKVLLPQQVFDPRPPAPAPAPS 199
Query: 385 KAPKADKENSSAEDDDDQGQGTKNSSGANRLISSIRGTT--LVLSLVLA 245
+ K++ S DD ++S A R + S+ V+S++LA
Sbjct: 200 VSKSKKKKDDSDSSSDD---SPADASFALRNVGSVCDAVSFCVMSVMLA 245
>gb|AAK95321.1|AF410335_1 AT5g60490/muf9_140 [Arabidopsis thaliana]
gi|23308259|gb|AAN18099.1| At5g60490/muf9_140
[Arabidopsis thaliana]
Length = 239
Score = 75.9 bits (185), Expect = 3e-13
Identities = 38/77 (49%), Positives = 54/77 (69%), Gaps = 2/77 (2%)
Frame = -1
Query: 565 FELNVTAYGNSVNISTGVVDVTITGIVYFDKTLAIYRVDKVLIPLDFKKPKPIAPAPA-- 392
F LNVT GN+VNI++GV + T++G VY D LA+Y+VDKVL+P P+P APAPA
Sbjct: 140 FPLNVTTSGNTVNITSGVTNTTVSGNVYSDGQLAVYQVDKVLLPQQVFDPRPPAPAPAPS 199
Query: 391 LAKAPKADKENSSAEDD 341
++K+ K ++ S+ DD
Sbjct: 200 VSKSKKKKDDSDSSSDD 216
>gb|AAM62616.1| arabinogalactan protein-like [Arabidopsis thaliana]
Length = 246
Score = 74.7 bits (182), Expect = 7e-13
Identities = 47/114 (41%), Positives = 68/114 (59%)
Frame = -1
Query: 565 FELNVTAYGNSVNISTGVVDVTITGIVYFDKTLAIYRVDKVLIPLDFKKPKPIAPAPALA 386
F LN+T+ GN VNI+TGVV T+ VY DK LA+Y+VD+VL+PL +APAPA
Sbjct: 138 FPLNITSSGNQVNITTGVVSATVANSVYSDKQLAVYQVDQVLLPLAM-FGSSVAPAPAPE 196
Query: 385 KAPKADKENSSAEDDDDQGQGTKNSSGANRLISSIRGTTLVLSLVLAAAAAATM 224
K K ++S DD G + +SS A R + G + ++ V A AA++++
Sbjct: 197 KGGSVSKGSASGGDD---GGDSTDSSDAER---TAFGFGIRITTVAAIAASSSL 244
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 478,288,585
Number of Sequences: 1393205
Number of extensions: 10568553
Number of successful extensions: 43199
Number of sequences better than 10.0: 74
Number of HSP's better than 10.0 without gapping: 39510
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42812
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20382500157
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
