Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014924A_C01 KMC014924A_c01
(693 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM61471.1| unknown [Arabidopsis thaliana] 171 1e-41
gb|AAK32906.1|AF367319_1 AT5g59960/mmn10_180 [Arabidopsis thalia... 170 2e-41
ref|NP_568917.1| putative protein; protein id: At5g59960.1, supp... 170 2e-41
dbj|BAB08364.1| gene_id:MMN10.21~unknown protein [Arabidopsis th... 128 7e-29
dbj|BAB03617.1| P0009G03.17 [Oryza sativa (japonica cultivar-gro... 73 4e-12
>gb|AAM61471.1| unknown [Arabidopsis thaliana]
Length = 359
Score = 171 bits (432), Expect = 1e-41
Identities = 85/128 (66%), Positives = 105/128 (81%)
Frame = +2
Query: 245 EKKMTEAHSPPRTSAYLDALCQAIHKKLQRALANSSQRRNLLQELFADVALEVDDRAKDV 424
EK + + S R SAYL+AL Q I KKL RA+ + +Q RNLLQ+LFAD+ALEVDDRAKDV
Sbjct: 2 EKVSSPSSSFSRRSAYLEALTQEIKKKLTRAVVSPAQTRNLLQDLFADIALEVDDRAKDV 61
Query: 425 IVNKEEDAISSAEYVNDGPLCFYDVLADYFVRVPESGKPILDMIVQLWSQSFASHIFALL 604
I++KEED I+S E DGPLCF+DVLADY+V+V E GK ILD++VQLWSQSFASHIF+LL
Sbjct: 62 ILSKEEDVITSDEADADGPLCFFDVLADYYVKVSERGKDILDLMVQLWSQSFASHIFSLL 121
Query: 605 FHKWVCQL 628
FHKW+ ++
Sbjct: 122 FHKWLFEV 129
>gb|AAK32906.1|AF367319_1 AT5g59960/mmn10_180 [Arabidopsis thaliana]
gi|22137192|gb|AAM91441.1| AT5g59960/mmn10_180
[Arabidopsis thaliana]
Length = 212
Score = 170 bits (431), Expect = 2e-41
Identities = 85/128 (66%), Positives = 105/128 (81%)
Frame = +2
Query: 245 EKKMTEAHSPPRTSAYLDALCQAIHKKLQRALANSSQRRNLLQELFADVALEVDDRAKDV 424
EK + + S R SAYL+AL Q I KKL RA+ + +Q RNLLQ+LFAD+ALEVDDRAKDV
Sbjct: 2 EKVSSPSSSFSRRSAYLEALTQEIKKKLTRAVVSPAQTRNLLQDLFADIALEVDDRAKDV 61
Query: 425 IVNKEEDAISSAEYVNDGPLCFYDVLADYFVRVPESGKPILDMIVQLWSQSFASHIFALL 604
I++KEED I+S E DGPLCF+DVLADY+V+V E GK ILD++VQLWSQSFASHIF+LL
Sbjct: 62 ILSKEEDLITSDEADADGPLCFFDVLADYYVKVSERGKDILDLMVQLWSQSFASHIFSLL 121
Query: 605 FHKWVCQL 628
FHKW+ ++
Sbjct: 122 FHKWLFEV 129
>ref|NP_568917.1| putative protein; protein id: At5g59960.1, supported by cDNA:
120982., supported by cDNA: gi_13605840 [Arabidopsis
thaliana]
Length = 359
Score = 170 bits (431), Expect = 2e-41
Identities = 85/128 (66%), Positives = 105/128 (81%)
Frame = +2
Query: 245 EKKMTEAHSPPRTSAYLDALCQAIHKKLQRALANSSQRRNLLQELFADVALEVDDRAKDV 424
EK + + S R SAYL+AL Q I KKL RA+ + +Q RNLLQ+LFAD+ALEVDDRAKDV
Sbjct: 2 EKVSSPSSSFSRRSAYLEALTQEIKKKLTRAVVSPAQTRNLLQDLFADIALEVDDRAKDV 61
Query: 425 IVNKEEDAISSAEYVNDGPLCFYDVLADYFVRVPESGKPILDMIVQLWSQSFASHIFALL 604
I++KEED I+S E DGPLCF+DVLADY+V+V E GK ILD++VQLWSQSFASHIF+LL
Sbjct: 62 ILSKEEDLITSDEADADGPLCFFDVLADYYVKVSERGKDILDLMVQLWSQSFASHIFSLL 121
Query: 605 FHKWVCQL 628
FHKW+ ++
Sbjct: 122 FHKWLFEV 129
>dbj|BAB08364.1| gene_id:MMN10.21~unknown protein [Arabidopsis thaliana]
Length = 290
Score = 128 bits (322), Expect = 7e-29
Identities = 66/105 (62%), Positives = 83/105 (78%)
Frame = +2
Query: 245 EKKMTEAHSPPRTSAYLDALCQAIHKKLQRALANSSQRRNLLQELFADVALEVDDRAKDV 424
EK + + S R SAYL+AL Q I KKL RA+ + +Q RNLLQ+LFAD+ALEVDDRAKDV
Sbjct: 2 EKVSSPSSSFSRRSAYLEALTQEIKKKLTRAVVSPAQTRNLLQDLFADIALEVDDRAKDV 61
Query: 425 IVNKEEDAISSAEYVNDGPLCFYDVLADYFVRVPESGKPILDMIV 559
I++KEED I+S E DGPLCF+DVLADY+V+V E GK ILD+++
Sbjct: 62 ILSKEEDLITSDEADADGPLCFFDVLADYYVKVSERGKDILDLML 106
>dbj|BAB03617.1| P0009G03.17 [Oryza sativa (japonica cultivar-group)]
Length = 230
Score = 72.8 bits (177), Expect = 4e-12
Identities = 40/100 (40%), Positives = 62/100 (62%), Gaps = 18/100 (18%)
Frame = +2
Query: 278 RTSAYLDALCQAIHKKLQRALANSSQRRNLLQELFADVALEVDDRAKD------------ 421
R + +L+AL I +KLQ+AL ++SQR LLQ+LFAD+AL+VDDRA+
Sbjct: 4 RAADHLEALSLEIERKLQKALNSNSQRLQLLQQLFADIALKVDDRARGAISFIASDVNQT 63
Query: 422 ------VIVNKEEDAISSAEYVNDGPLCFYDVLADYFVRV 523
VI++ +D I+ + D LCFY++LA++FV++
Sbjct: 64 NAFSSYVILSTNDDGIAPVDEREDTRLCFYEILANHFVKL 103
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 562,363,466
Number of Sequences: 1393205
Number of extensions: 11887741
Number of successful extensions: 63578
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 41809
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59725
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 31401661572
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
