Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014918A_C01 KMC014918A_c01
(652 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM63469.1| unknown [Arabidopsis thaliana] 160 1e-38
ref|NP_566526.1| expressed protein; protein id: At3g15810.1, sup... 160 1e-38
ref|NP_178129.1| hypothetical protein; protein id: At1g80120.1 [... 148 5e-35
dbj|BAB56075.1| P0665A11.21 [Oryza sativa (japonica cultivar-gro... 107 2e-22
ref|NP_680135.1| expressed protein; protein id: At5g01750.2, sup... 67 2e-10
>gb|AAM63469.1| unknown [Arabidopsis thaliana]
Length = 206
Score = 160 bits (405), Expect = 1e-38
Identities = 81/133 (60%), Positives = 104/133 (77%)
Frame = -2
Query: 651 LHQRWEGFRGERTDGDKPMFSVKRSSIIGRSRTTLTVEVYDNPGVEYLIEGCFPQRCCKI 472
LHQRWEGF GER++G KP+FSV+RSSIIGR T+ VEVYD G EY+I+G F QR C I
Sbjct: 79 LHQRWEGFLGERSEGQKPIFSVRRSSIIGRC--TMEVEVYDGTGEEYIIDGDFSQRSCLI 136
Query: 471 YNSTRKLVAEIRRKVDPTTSVMLGKEVFMLCVQPGFDGSFAMGLVLVLDQINGENFFDSG 292
Y++ + VAEI+RKVD +T+VMLG++VF L ++PGFDG+FAMGLV+VLDQING++ + G
Sbjct: 137 YDTKKCTVAEIKRKVDASTNVMLGRDVFTLEIKPGFDGAFAMGLVVVLDQINGDDPVEIG 196
Query: 291 ITTEPAVHPATED 253
+ VHP ED
Sbjct: 197 ---DEQVHPFVED 206
>ref|NP_566526.1| expressed protein; protein id: At3g15810.1, supported by cDNA:
2528., supported by cDNA: gi_17380787, supported by
cDNA: gi_20259608 [Arabidopsis thaliana]
gi|11994353|dbj|BAB02312.1|
gb|AAD55470.1~gene_id:MSJ11.21~similar to unknown
protein [Arabidopsis thaliana]
gi|17380788|gb|AAL36224.1| unknown protein [Arabidopsis
thaliana] gi|20259609|gb|AAM14161.1| unknown protein
[Arabidopsis thaliana]
Length = 220
Score = 160 bits (405), Expect = 1e-38
Identities = 81/133 (60%), Positives = 104/133 (77%)
Frame = -2
Query: 651 LHQRWEGFRGERTDGDKPMFSVKRSSIIGRSRTTLTVEVYDNPGVEYLIEGCFPQRCCKI 472
LHQRWEGF GER++G KP+FSV+RSSIIGR T+ VEVYD G EY+I+G F QR C I
Sbjct: 93 LHQRWEGFLGERSEGQKPIFSVRRSSIIGRC--TMEVEVYDGTGEEYIIDGDFSQRSCLI 150
Query: 471 YNSTRKLVAEIRRKVDPTTSVMLGKEVFMLCVQPGFDGSFAMGLVLVLDQINGENFFDSG 292
Y++ + VAEI+RKVD +T+VMLG++VF L ++PGFDG+FAMGLV+VLDQING++ + G
Sbjct: 151 YDTKKCTVAEIKRKVDASTNVMLGRDVFTLEIKPGFDGAFAMGLVVVLDQINGDDPVEIG 210
Query: 291 ITTEPAVHPATED 253
+ VHP ED
Sbjct: 211 ---DEQVHPFVED 220
>ref|NP_178129.1| hypothetical protein; protein id: At1g80120.1 [Arabidopsis
thaliana] gi|25406633|pir||G96832 hypothetical protein
F18B13.20 [imported] - Arabidopsis thaliana
gi|5902368|gb|AAD55470.1|AC009322_10 Unknown protein
[Arabidopsis thaliana] gi|28393296|gb|AAO42075.1|
unknown protein [Arabidopsis thaliana]
gi|28827698|gb|AAO50693.1| unknown protein [Arabidopsis
thaliana]
Length = 210
Score = 148 bits (374), Expect = 5e-35
Identities = 82/135 (60%), Positives = 102/135 (74%), Gaps = 2/135 (1%)
Frame = -2
Query: 651 LHQRWEGFRGERTDGDKPMFSVKRSSIIGRSRTTLTVEVY-DNPGVEYLIEGCFPQRCCK 475
L +RWEG+ GER+DG KP+F V+RSSIIGR+ ++TVEVY D EYLIEG F R C
Sbjct: 80 LRRRWEGYLGERSDGQKPIFGVRRSSIIGRN--SVTVEVYGDYQCSEYLIEGSFGARNCT 137
Query: 474 IYNS-TRKLVAEIRRKVDPTTSVMLGKEVFMLCVQPGFDGSFAMGLVLVLDQINGENFFD 298
+ + TR+ VAEIRRKVD +T+VMLGK+VF L V+PGFDG+FAMGLVLVLDQI G++ +
Sbjct: 138 VVEAETRRKVAEIRRKVDASTNVMLGKDVFSLNVKPGFDGAFAMGLVLVLDQIYGDDLLE 197
Query: 297 SGITTEPAVHPATED 253
G E VHP+ ED
Sbjct: 198 VG---EEQVHPSAED 209
>dbj|BAB56075.1| P0665A11.21 [Oryza sativa (japonica cultivar-group)]
Length = 227
Score = 107 bits (266), Expect = 2e-22
Identities = 59/131 (45%), Positives = 79/131 (60%), Gaps = 17/131 (12%)
Frame = -2
Query: 651 LHQRWEGFRGERTDGDKPMFSVKRSSIIGRSRTTLTVEVY----------DNPGVEYL-I 505
LHQRWEG+ G R DG KP+FS +RSSI+G + VE+ E L +
Sbjct: 81 LHQRWEGYLGARADGQKPLFSARRSSILGGAAAGAVVELLAPLPASFSSTHAAAAELLRV 140
Query: 504 EGCFPQRCCKIY------NSTRKLVAEIRRKVDPTTSVMLGKEVFMLCVQPGFDGSFAMG 343
+G FP+RCC++ +VAEIRRKVD V++G++VF+L V GFD +FAM
Sbjct: 141 DGSFPRRCCRVVAPKAESGGEAAVVAEIRRKVDEGARVVMGRDVFVLRVGAGFDAAFAMA 200
Query: 342 LVLVLDQINGE 310
+VLVLDQI G+
Sbjct: 201 IVLVLDQIAGD 211
>ref|NP_680135.1| expressed protein; protein id: At5g01750.2, supported by cDNA:
gi_13926236 [Arabidopsis thaliana]
gi|11282362|pir||T48196 hypothetical protein T20L15.20 -
Arabidopsis thaliana gi|7329648|emb|CAB82745.1| putative
protein [Arabidopsis thaliana]
gi|13926237|gb|AAK49593.1|AF372877_1 AT5g01750/T20L15_20
[Arabidopsis thaliana] gi|22655412|gb|AAM98298.1|
At5g01750/T20L15_20 [Arabidopsis thaliana]
Length = 217
Score = 67.4 bits (163), Expect = 2e-10
Identities = 41/119 (34%), Positives = 69/119 (57%), Gaps = 4/119 (3%)
Frame = -2
Query: 651 LHQRWEGFRGERTDGDKPMFSVKRSSIIGRSRTTLTVEV---YDNPGVEYLIEGCFPQRC 481
+H RW+ FRG TD +++VKRSS++ + +T L V + D ++ ++G + +R
Sbjct: 98 MHDRWQVFRGGSTDQRDLLYTVKRSSML-QLKTKLDVFLGHNKDEKRCDFRVKGSWLERS 156
Query: 480 CKIY-NSTRKLVAEIRRKVDPTTSVMLGKEVFMLCVQPGFDGSFAMGLVLVLDQINGEN 307
C +Y + +VA++ RK SV LGK+ F + V P D +F LV++LD +N E+
Sbjct: 157 CVVYAGESDAIVAQMHRK-HTVQSVFLGKDNFSVTVYPNVDYAFIASLVVILDDVNRED 214
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 604,101,643
Number of Sequences: 1393205
Number of extensions: 14192483
Number of successful extensions: 31363
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 30346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31328
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27860523586
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
