Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014904A_C01 KMC014904A_c01
(476 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_189292.1| unknown protein; protein id: At3g26600.1 [Arabi... 38 0.064
ref|NP_416266.1| orf, hypothetical protein [Escherichia coli K12... 31 6.0
ref|NP_754047.1| Hypothetical protein ydjZ [Escherichia coli CFT... 31 6.0
ref|NP_707361.1| orf, conserved hypothetical protein [Shigella f... 31 6.0
ref|NP_444282.2| sperm-associated cation channel 1; cation chann... 31 7.8
>ref|NP_189292.1| unknown protein; protein id: At3g26600.1 [Arabidopsis thaliana]
gi|1402879|emb|CAA66810.1| unknown [Arabidopsis
thaliana] gi|1495247|emb|CAA66220.1| orf 05 [Arabidopsis
thaliana] gi|9293939|dbj|BAB01842.1|
emb|CAA66810.1~gene_id:MFE16.13~strong similarity to
unknown protein [Arabidopsis thaliana]
Length = 615
Score = 37.7 bits (86), Expect = 0.064
Identities = 21/39 (53%), Positives = 28/39 (70%), Gaps = 2/39 (5%)
Frame = -1
Query: 476 LEGADRTAVPPH--LRELVSRTIYHLNLYHTGMNSQRIS 366
LEGA+R A + LRELVS+ IY L+LY+ G +SQ +S
Sbjct: 573 LEGAERLAGLQNMELRELVSKAIYQLSLYNAGSHSQMLS 611
>ref|NP_416266.1| orf, hypothetical protein [Escherichia coli K12]
gi|2829642|sp|P76221|YDJZ_ECOLI Hypothetical protein
ydjZ gi|7466221|pir||H64934 hypothetical protein b1752 -
Escherichia coli (strain K-12) gi|1788049|gb|AAC74822.1|
orf, hypothetical protein [Escherichia coli K12]
Length = 235
Score = 31.2 bits (69), Expect = 6.0
Identities = 15/35 (42%), Positives = 21/35 (59%)
Frame = +2
Query: 365 MISFENSFLYGTN*GGILSWTPILLDAAERLFYLR 469
+I+F N+ L+G GG+LSWT + AA F R
Sbjct: 84 LITFANASLFGAFWGGLLSWTSSMAGAALCFFIAR 118
>ref|NP_754047.1| Hypothetical protein ydjZ [Escherichia coli CFT073]
gi|26108410|gb|AAN80612.1|AE016761_187 Hypothetical
protein ydjZ [Escherichia coli CFT073]
Length = 235
Score = 31.2 bits (69), Expect = 6.0
Identities = 15/35 (42%), Positives = 21/35 (59%)
Frame = +2
Query: 365 MISFENSFLYGTN*GGILSWTPILLDAAERLFYLR 469
+I+F N+ L+G GG+LSWT + AA F R
Sbjct: 84 LITFANASLFGAFWGGLLSWTSSMAGAALCFFIAR 118
>ref|NP_707361.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
gi|24051789|gb|AAN43068.1|AE015170_10 orf, conserved
hypothetical protein [Shigella flexneri 2a str. 301]
Length = 235
Score = 31.2 bits (69), Expect = 6.0
Identities = 15/35 (42%), Positives = 21/35 (59%)
Frame = +2
Query: 365 MISFENSFLYGTN*GGILSWTPILLDAAERLFYLR 469
+I+F N+ L+G GG+LSWT + AA F R
Sbjct: 84 LITFANASLFGAFWGGLLSWTSSMAGAALCFFIAR 118
>ref|NP_444282.2| sperm-associated cation channel 1; cation channel of sperm; sperm
ion channel [Homo sapiens]
Length = 780
Score = 30.8 bits (68), Expect = 7.8
Identities = 14/32 (43%), Positives = 19/32 (58%)
Frame = -1
Query: 449 PPHLRELVSRTIYHLNLYHTGMNSQRISSYLP 354
PPH R SR ++H L+H G+ QR S+ P
Sbjct: 29 PPHHRPGHSRALHHYELHHHGVPHQRGESHHP 60
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 400,612,386
Number of Sequences: 1393205
Number of extensions: 8218133
Number of successful extensions: 22776
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 22369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22771
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13106568690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
