Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014890A_C01 KMC014890A_c01
(566 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564603.1| expressed protein; protein id: At1g52220.1, sup... 142 4e-33
gb|AAM63306.1| unknown [Arabidopsis thaliana] 138 4e-32
ref|NP_566086.1| expressed protein; protein id: At2g46820.1, sup... 99 5e-20
dbj|BAB61215.1| contains ESTs AU066201(S5593),AU032549(S10727),A... 96 4e-19
gb|AAM63765.1| unknown [Arabidopsis thaliana] 94 9e-19
>ref|NP_564603.1| expressed protein; protein id: At1g52220.1, supported by cDNA:
21305., supported by cDNA: gi_15294155, supported by
cDNA: gi_20453284 [Arabidopsis thaliana]
gi|25354696|pir||B96562 unknown protein [imported] -
Arabidopsis thaliana gi|6850346|gb|AAF29409.1|AC022354_8
unknown protein [Arabidopsis thaliana]
gi|15294156|gb|AAK95255.1|AF410269_1 At1g52220/F9I5_10
[Arabidopsis thaliana] gi|20453285|gb|AAM19881.1|
At1g52220/F9I5_10 [Arabidopsis thaliana]
Length = 156
Score = 142 bits (357), Expect = 4e-33
Identities = 67/92 (72%), Positives = 79/92 (85%)
Frame = -1
Query: 566 STSLTVLQSVQNVWDKPEDRLGLIGFGFAGIVALWASANLITAVDPLPVLPTVLELIGIL 387
ST L V+ ++QNVWDK EDRLGLIG GFAGIVALWAS NLITA+D LPV+ + EL+GIL
Sbjct: 64 STDLDVVSTIQNVWDKSEDRLGLIGLGFAGIVALWASLNLITAIDKLPVISSGFELVGIL 123
Query: 386 FSVWFTYRYLLFKPDREELFQILNQSVSDILG 291
FS WFTYRYLLFKPDR+EL +I+ +SV+DILG
Sbjct: 124 FSTWFTYRYLLFKPDRQELSKIVKKSVADILG 155
>gb|AAM63306.1| unknown [Arabidopsis thaliana]
Length = 156
Score = 138 bits (348), Expect = 4e-32
Identities = 66/92 (71%), Positives = 78/92 (84%)
Frame = -1
Query: 566 STSLTVLQSVQNVWDKPEDRLGLIGFGFAGIVALWASANLITAVDPLPVLPTVLELIGIL 387
ST L V+ ++QNVWDK EDRLGLIG GFAGIVALWAS NLITA+D L V+ + EL+GIL
Sbjct: 64 STDLDVVSTIQNVWDKSEDRLGLIGLGFAGIVALWASLNLITAIDKLXVISSGFELVGIL 123
Query: 386 FSVWFTYRYLLFKPDREELFQILNQSVSDILG 291
FS WFTYRYLLFKPDR+EL +I+ +SV+DILG
Sbjct: 124 FSTWFTYRYLLFKPDRQELSKIVKKSVADILG 155
>ref|NP_566086.1| expressed protein; protein id: At2g46820.1, supported by cDNA:
26967., supported by cDNA: gi_17473793 [Arabidopsis
thaliana] gi|7485752|pir||T02683 hypothetical protein
At2g46820 [imported] - Arabidopsis thaliana
gi|3510256|gb|AAC33500.1| expressed protein [Arabidopsis
thaliana] gi|17473794|gb|AAL38332.1| unknown protein
[Arabidopsis thaliana] gi|21386997|gb|AAM47902.1|
unknown protein [Arabidopsis thaliana]
Length = 174
Score = 98.6 bits (244), Expect = 5e-20
Identities = 42/87 (48%), Positives = 64/87 (73%)
Frame = -1
Query: 551 VLQSVQNVWDKPEDRLGLIGFGFAGIVALWASANLITAVDPLPVLPTVLELIGILFSVWF 372
++++ Q W+K +D+ + FAG+VALW SA +I+A+D LP++P VLEL+GI ++ WF
Sbjct: 86 IVKTAQEAWEKVDDKYAIGSLAFAGVVALWGSAGMISAIDRLPLVPGVLELVGIGYTGWF 145
Query: 371 TYRYLLFKPDREELFQILNQSVSDILG 291
TY+ L+FKPDRE LF+ + + DILG
Sbjct: 146 TYKNLVFKPDREALFEKVKSTYKDILG 172
>dbj|BAB61215.1| contains ESTs
AU066201(S5593),AU032549(S10727),AU088748(S5593)~unknown
protein [Oryza sativa (japonica cultivar-group)]
gi|20804672|dbj|BAB92360.1| P0512C01.12 [Oryza sativa
(japonica cultivar-group)]
Length = 151
Score = 95.5 bits (236), Expect = 4e-19
Identities = 48/91 (52%), Positives = 62/91 (67%)
Frame = -1
Query: 563 TSLTVLQSVQNVWDKPEDRLGLIGFGFAGIVALWASANLITAVDPLPVLPTVLELIGILF 384
+S +V++ VQ+ + PED L G GFAGI ALWAS NL+ +D LPVLP + ELIGIL
Sbjct: 60 SSGSVVKYVQSSFSSPEDLFALAGIGFAGIAALWASINLVEVIDKLPVLPLLFELIGILV 119
Query: 383 SVWFTYRYLLFKPDREELFQILNQSVSDILG 291
+ F Y+ LLFKPDRE+ + SVS +LG
Sbjct: 120 AWLFIYQNLLFKPDREKFLNNIKSSVSRVLG 150
>gb|AAM63765.1| unknown [Arabidopsis thaliana]
Length = 174
Score = 94.4 bits (233), Expect = 9e-19
Identities = 40/87 (45%), Positives = 62/87 (70%)
Frame = -1
Query: 551 VLQSVQNVWDKPEDRLGLIGFGFAGIVALWASANLITAVDPLPVLPTVLELIGILFSVWF 372
++++ Q W+K +D+ + FA +VALW SA +I+ +D LP++P VLEL+GI ++ WF
Sbjct: 86 IVKTAQEAWEKVDDKYAIGSLAFASVVALWGSAGMISPIDRLPLVPGVLELVGIGYTGWF 145
Query: 371 TYRYLLFKPDREELFQILNQSVSDILG 291
TY+ L+FKPDRE LF+ + + DILG
Sbjct: 146 TYKNLVFKPDREALFEKVKSTYKDILG 172
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 473,537,856
Number of Sequences: 1393205
Number of extensions: 10112406
Number of successful extensions: 24529
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 23952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24523
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
