Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014889A_C01 KMC014889A_c01
(606 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_175424.1| tubulin alpha-6 chain, putative; protein id: At... 102 3e-21
gb|AAM62712.1| tubulin alpha-6 chain, putative [Arabidopsis thal... 102 3e-21
ref|NP_705395.1| phosphatidylinositol transfer protein, putative... 35 0.99
ref|NP_702087.1| hypothetical protein [Plasmodium falciparum 3D7... 34 1.7
ref|XP_049078.2| similar to KIAA1239 protein [Homo sapiens] 33 2.9
>ref|NP_175424.1| tubulin alpha-6 chain, putative; protein id: At1g50020.1, supported
by cDNA: 153811., supported by cDNA: gi_12248026,
supported by cDNA: gi_13430517 [Arabidopsis thaliana]
gi|25373254|pir||F96536 hypothetical protein F2J10.10
[imported] - Arabidopsis thaliana
gi|8569098|gb|AAF76443.1|AC015445_10 ESTs gb|F20048,
gb|F20049 come from this gene. [Arabidopsis thaliana]
gi|12248027|gb|AAG50105.1|AF334727_1 putative tubulin
alpha-6 chain [Arabidopsis thaliana]
gi|13430518|gb|AAK25881.1|AF360171_1 putative tubulin
alpha-6 chain [Arabidopsis thaliana]
Length = 209
Score = 102 bits (255), Expect = 3e-21
Identities = 48/79 (60%), Positives = 58/79 (72%)
Frame = -2
Query: 605 GFEGLVPRAKLLLTLGGTFFLAFGPLILVTVALFFALYFYFGPSFVPDGSNMFFFPPQYV 426
G EGL+PRA++LLT+GGTFFL F PLI++T+ F ALY YFG F+ DGS PP Y+
Sbjct: 131 GLEGLIPRARILLTIGGTFFLGFWPLIVLTLGAFSALYLYFGADFIHDGSRTPVSPPPYI 190
Query: 425 GPYELLEDERIFQIAPRLN 369
PY LLEDERI + PRLN
Sbjct: 191 DPYALLEDERISGMDPRLN 209
>gb|AAM62712.1| tubulin alpha-6 chain, putative [Arabidopsis thaliana]
Length = 209
Score = 102 bits (255), Expect = 3e-21
Identities = 48/79 (60%), Positives = 58/79 (72%)
Frame = -2
Query: 605 GFEGLVPRAKLLLTLGGTFFLAFGPLILVTVALFFALYFYFGPSFVPDGSNMFFFPPQYV 426
G EGL+PRA++LLT+GGTFFL F PLI++T+ F ALY YFG F+ DGS PP Y+
Sbjct: 131 GLEGLIPRARILLTIGGTFFLGFWPLIVLTLGAFSALYLYFGADFIHDGSRTPVSPPPYI 190
Query: 425 GPYELLEDERIFQIAPRLN 369
PY LLEDERI + PRLN
Sbjct: 191 DPYALLEDERISGMDPRLN 209
>ref|NP_705395.1| phosphatidylinositol transfer protein, putative [Plasmodium
falciparum 3D7] gi|23615640|emb|CAD52632.1|
phosphatidylinositol transfer protein, putative
[Plasmodium falciparum 3D7]
Length = 1856
Score = 34.7 bits (78), Expect = 0.99
Identities = 23/77 (29%), Positives = 37/77 (47%)
Frame = -2
Query: 326 LYIYQFLFT*PLLI*LLCKISSWKKLVIYFAFIIG*ILFMCLFAFCIYVVYI*NLNESPI 147
LY++ F+F +I ++ + S+ L +YF + F LF FCI ++YI N PI
Sbjct: 1069 LYLFYFIFN---IISIMSCMYSFISLYLYFKIYF--LSFFLLF-FCICIIYIYISNHKPI 1122
Query: 146 RSTITIFLYFPVEVRYL 96
L P + Y+
Sbjct: 1123 NHMYKCSLNIPYNINYV 1139
>ref|NP_702087.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23497265|gb|AAN36811.1|AE014819_22 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 1149
Score = 33.9 bits (76), Expect = 1.7
Identities = 15/47 (31%), Positives = 26/47 (54%)
Frame = +3
Query: 453 IASVGNKRRSKIKVKSKKQCNGYEDQRPKCQKECSSQCQQKFSSRYQ 593
+ + NK++ K K K K Q G E + K Q++C + Q+K+ + Q
Sbjct: 119 LIKINNKKKKKKKGKRKNQDKGQEKNQDKGQEKCHDKGQEKYHDKGQ 165
>ref|XP_049078.2| similar to KIAA1239 protein [Homo sapiens]
Length = 1132
Score = 33.1 bits (74), Expect = 2.9
Identities = 28/84 (33%), Positives = 38/84 (44%), Gaps = 2/84 (2%)
Frame = +3
Query: 54 HLSLCTSVDKKLHPKISNFNWKIQKYSNGTSNGAFI*ISNIHNIYAKCKKAHEKNLANDE 233
HL+ C D L+ I NF+W G + +S+I Y ++ K LAN
Sbjct: 230 HLTRCGKTDDLLYGIIMNFSWLYTMIKIGQFDKV---LSDIELAYNYSQEKELKFLANTL 286
Query: 234 RKIDNKF--FPG*YFTKELNQQRL 299
R I NK FPG + EL Q+ L
Sbjct: 287 RSIKNKVTAFPG-SLSAELQQRLL 309
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 491,482,021
Number of Sequences: 1393205
Number of extensions: 10492334
Number of successful extensions: 26984
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 25732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26916
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23997478008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
