Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014888A_C01 KMC014888A_c01
(396 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567984.1| putative protein; protein id: At4g35360.1, supp... 111 2e-24
gb|AAM63225.1| unknown [Arabidopsis thaliana] 111 2e-24
gb|AAM63619.1| unknown [Arabidopsis thaliana] 104 3e-22
ref|NP_565412.1| expressed protein; protein id: At2g17340.1, sup... 104 3e-22
pir||A84551 hypothetical protein At2g17340 [imported] - Arabidop... 104 3e-22
>ref|NP_567984.1| putative protein; protein id: At4g35360.1, supported by cDNA:
206573., supported by cDNA: gi_17063178 [Arabidopsis
thaliana] gi|17063179|gb|AAL32984.1| unknown protein
[Arabidopsis thaliana] gi|23506025|gb|AAN28872.1|
At4g35360/F23E12_80 [Arabidopsis thaliana]
Length = 367
Score = 111 bits (278), Expect = 2e-24
Identities = 52/64 (81%), Positives = 60/64 (93%)
Frame = -1
Query: 396 SEEIAFHANDADLVILEGMGRGIETNLFAEFKCDSLKIAMVKHPEVAEFLGSRLYDCVIK 217
S+E+A+ ++DADLVILEGMGRGIETNL+A+FKCDSLKI MVKHPEVA+FLG RLYDCVIK
Sbjct: 302 SQEVAYLSSDADLVILEGMGRGIETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVIK 361
Query: 216 YIEV 205
Y EV
Sbjct: 362 YNEV 365
>gb|AAM63225.1| unknown [Arabidopsis thaliana]
Length = 367
Score = 111 bits (278), Expect = 2e-24
Identities = 52/64 (81%), Positives = 60/64 (93%)
Frame = -1
Query: 396 SEEIAFHANDADLVILEGMGRGIETNLFAEFKCDSLKIAMVKHPEVAEFLGSRLYDCVIK 217
S+E+A+ ++DADLVILEGMGRGIETNL+A+FKCDSLKI MVKHPEVA+FLG RLYDCVIK
Sbjct: 302 SQEVAYLSSDADLVILEGMGRGIETNLYAQFKCDSLKIGMVKHPEVAQFLGGRLYDCVIK 361
Query: 216 YIEV 205
Y EV
Sbjct: 362 YNEV 365
>gb|AAM63619.1| unknown [Arabidopsis thaliana]
Length = 367
Score = 104 bits (259), Expect = 3e-22
Identities = 49/64 (76%), Positives = 58/64 (90%)
Frame = -1
Query: 396 SEEIAFHANDADLVILEGMGRGIETNLFAEFKCDSLKIAMVKHPEVAEFLGSRLYDCVIK 217
S+E+A+ ++DADLVI+EGMGRGIETNL+A+FKCDSLKI MVKH EVAEFLG RLYDCV K
Sbjct: 302 SQELAYLSSDADLVIVEGMGRGIETNLYAQFKCDSLKIGMVKHLEVAEFLGGRLYDCVFK 361
Query: 216 YIEV 205
+ EV
Sbjct: 362 FNEV 365
>ref|NP_565412.1| expressed protein; protein id: At2g17340.1, supported by cDNA:
2578., supported by cDNA: gi_15293086, supported by
cDNA: gi_20465694 [Arabidopsis thaliana]
gi|15293087|gb|AAK93654.1| unknown protein [Arabidopsis
thaliana] gi|20465695|gb|AAM20316.1| unknown protein
[Arabidopsis thaliana]
Length = 367
Score = 104 bits (259), Expect = 3e-22
Identities = 49/64 (76%), Positives = 58/64 (90%)
Frame = -1
Query: 396 SEEIAFHANDADLVILEGMGRGIETNLFAEFKCDSLKIAMVKHPEVAEFLGSRLYDCVIK 217
S+E+A+ ++DADLVI+EGMGRGIETNL+A+FKCDSLKI MVKH EVAEFLG RLYDCV K
Sbjct: 302 SQELAYLSSDADLVIVEGMGRGIETNLYAQFKCDSLKIGMVKHLEVAEFLGGRLYDCVFK 361
Query: 216 YIEV 205
+ EV
Sbjct: 362 FNEV 365
>pir||A84551 hypothetical protein At2g17340 [imported] - Arabidopsis thaliana
Length = 357
Score = 104 bits (259), Expect = 3e-22
Identities = 49/64 (76%), Positives = 58/64 (90%)
Frame = -1
Query: 396 SEEIAFHANDADLVILEGMGRGIETNLFAEFKCDSLKIAMVKHPEVAEFLGSRLYDCVIK 217
S+E+A+ ++DADLVI+EGMGRGIETNL+A+FKCDSLKI MVKH EVAEFLG RLYDCV K
Sbjct: 292 SQELAYLSSDADLVIVEGMGRGIETNLYAQFKCDSLKIGMVKHLEVAEFLGGRLYDCVFK 351
Query: 216 YIEV 205
+ EV
Sbjct: 352 FNEV 355
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 278,218,627
Number of Sequences: 1393205
Number of extensions: 4842479
Number of successful extensions: 10475
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 10298
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10475
length of database: 448,689,247
effective HSP length: 107
effective length of database: 299,616,312
effective search space used: 7190791488
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
