Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014884A_C01 KMC014884A_c01
(575 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAA34366.1| ribosomal protein L41 221 7e-57
sp|Q96499|RL44_GOSHI 60S RIBOSOMAL PROTEIN L44 gi|2119128|pir||J... 219 1e-56
gb|AAK94425.1|AF398144_1 60S ribosomal protein L144 [Brassica ra... 216 2e-55
dbj|BAC15877.1| contains ESTs D22616(C0561),AU098311(C0735)~puta... 212 3e-54
ref|NP_188981.1| putative ribosomal protein; protein id: At3g233... 210 1e-53
>gb|AAA34366.1| ribosomal protein L41
Length = 105
Score = 221 bits (562), Expect = 7e-57
Identities = 103/105 (98%), Positives = 104/105 (98%)
Frame = -1
Query: 515 MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSIAAQGKRRYDRKQSGYGGQTKPVFHK 336
MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDS+AAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1 MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
Query: 335 KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 201
KAKTTKKIVLRLQCQGCKHVSQH IKRCKHFEIGGDKKGKGTSLF
Sbjct: 61 KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 105
>sp|Q96499|RL44_GOSHI 60S RIBOSOMAL PROTEIN L44 gi|2119128|pir||JC4923 ribosomal protein
L36a.e, cytosolic - upland cotton
gi|1553129|gb|AAB08726.1| ribosomal protein L44 isoform
a [Gossypium hirsutum] gi|1553131|gb|AAB08727.1|
ribosomal protein L44 isoform b [Gossypium hirsutum]
Length = 105
Score = 219 bits (559), Expect = 1e-56
Identities = 102/105 (97%), Positives = 104/105 (98%)
Frame = -1
Query: 515 MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSIAAQGKRRYDRKQSGYGGQTKPVFHK 336
MVNVPKTKKTYCKSKEC+KHTLHKVTQYKKGKDS+AAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1 MVNVPKTKKTYCKSKECRKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
Query: 335 KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 201
KAKTTKKIVLRLQCQGCKHVSQH IKRCKHFEIGGDKKGKGTSLF
Sbjct: 61 KAKTTKKIVLRLQCQGCKHVSQHPIKRCKHFEIGGDKKGKGTSLF 105
>gb|AAK94425.1|AF398144_1 60S ribosomal protein L144 [Brassica rapa subsp. pekinensis]
Length = 119
Score = 216 bits (550), Expect = 2e-55
Identities = 100/107 (93%), Positives = 104/107 (96%)
Frame = -1
Query: 521 ATMVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSIAAQGKRRYDRKQSGYGGQTKPVF 342
A MVN+PKTKKTYCK+KECKKHTLHKVTQYKKGKDS+AAQGKRRYDRKQSGYGGQTKPVF
Sbjct: 13 AKMVNIPKTKKTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVF 72
Query: 341 HKKAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 201
HKKAKTTKKIVLRLQCQ CKH SQH+IKRCKHFEIGGDKKGKGTSLF
Sbjct: 73 HKKAKTTKKIVLRLQCQTCKHFSQHSIKRCKHFEIGGDKKGKGTSLF 119
>dbj|BAC15877.1| contains ESTs D22616(C0561),AU098311(C0735)~putative 60S ribosomal
protein L44 [Oryza sativa (japonica cultivar-group)]
Length = 105
Score = 212 bits (539), Expect = 3e-54
Identities = 97/105 (92%), Positives = 102/105 (96%)
Frame = -1
Query: 515 MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSIAAQGKRRYDRKQSGYGGQTKPVFHK 336
MVNVPKTKKTYCK+KEC+KHTLHKVTQYKKGKDS++AQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1 MVNVPKTKKTYCKNKECRKHTLHKVTQYKKGKDSLSAQGKRRYDRKQSGYGGQTKPVFHK 60
Query: 335 KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 201
KAKTTKKIVL+LQCQ CKH SQH IKRCKHFEIGGDKKGKGTSLF
Sbjct: 61 KAKTTKKIVLKLQCQSCKHYSQHPIKRCKHFEIGGDKKGKGTSLF 105
>ref|NP_188981.1| putative ribosomal protein; protein id: At3g23390.1, supported by
cDNA: 13557., supported by cDNA: gi_17065557
[Arabidopsis thaliana] gi|15236469|ref|NP_193168.1|
ribosomal protein; protein id: At4g14320.1, supported by
cDNA: 18153., supported by cDNA: gi_17473680
[Arabidopsis thaliana] gi|3122753|sp|O23290|RL44_ARATH
60S ribosomal protein L44 gi|7440769|pir||A71405
ribosomal protein L36a.e, cytosolic - Arabidopsis
thaliana gi|2244789|emb|CAB10211.1| ribosomal protein
[Arabidopsis thaliana] gi|7268137|emb|CAB78474.1|
ribosomal protein [Arabidopsis thaliana]
gi|11994324|dbj|BAB02283.1| 60S ribosomal protein
L44-like [Arabidopsis thaliana]
gi|17065558|gb|AAL32933.1| 60S ribosomal protein
L44-like [Arabidopsis thaliana]
gi|17473681|gb|AAL38297.1| ribosomal protein
[Arabidopsis thaliana] gi|20148621|gb|AAM10201.1|
ribosomal protein [Arabidopsis thaliana]
gi|21537384|gb|AAM61725.1| ribosomal protein
[Arabidopsis thaliana] gi|21553918|gb|AAM63001.1|
ribosomal protein [Arabidopsis thaliana]
gi|24899731|gb|AAN65080.1| 60S ribosomal protein
L44-like [Arabidopsis thaliana]
Length = 105
Score = 210 bits (534), Expect = 1e-53
Identities = 97/105 (92%), Positives = 100/105 (94%)
Frame = -1
Query: 515 MVNVPKTKKTYCKSKECKKHTLHKVTQYKKGKDSIAAQGKRRYDRKQSGYGGQTKPVFHK 336
MVN+PKTK TYCK+KECKKHTLHKVTQYKKGKDS+AAQGKRRYDRKQSGYGGQTKPVFHK
Sbjct: 1 MVNIPKTKNTYCKNKECKKHTLHKVTQYKKGKDSLAAQGKRRYDRKQSGYGGQTKPVFHK 60
Query: 335 KAKTTKKIVLRLQCQGCKHVSQHAIKRCKHFEIGGDKKGKGTSLF 201
KAKTTKKIVLRLQCQ CKH SQ IKRCKHFEIGGDKKGKGTSLF
Sbjct: 61 KAKTTKKIVLRLQCQSCKHFSQRPIKRCKHFEIGGDKKGKGTSLF 105
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 509,751,003
Number of Sequences: 1393205
Number of extensions: 11301635
Number of successful extensions: 43094
Number of sequences better than 10.0: 148
Number of HSP's better than 10.0 without gapping: 39553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42822
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
