Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014873A_C01 KMC014873A_c01
(476 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK93948.1|AF284759_1 TatC [Pisum sativum] 211 4e-54
pir||G84420 TATC-like protein [imported] - Arabidopsis thaliana 209 1e-53
ref|NP_565252.1| TATC-like protein; protein id: At2g01110.1, sup... 209 1e-53
dbj|BAB39766.1| OsTATC [Oryza sativa (japonica cultivar-group)] ... 209 2e-53
gb|ZP_00111954.1| hypothetical protein [Nostoc punctiforme] 159 1e-38
>gb|AAK93948.1|AF284759_1 TatC [Pisum sativum]
Length = 353
Score = 211 bits (536), Expect = 4e-54
Identities = 105/115 (91%), Positives = 110/115 (95%)
Frame = -3
Query: 474 SYLVLTPAALNFFVDYAEGAVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQFLLGQVGLV 295
SYLVL PAALNFFV+YAEGAVESLWSIDQYFEFVLVLMFSTGLSFQVP+IQ LLGQ+GLV
Sbjct: 239 SYLVLVPAALNFFVNYAEGAVESLWSIDQYFEFVLVLMFSTGLSFQVPIIQLLLGQLGLV 298
Query: 294 SGDQMLSVWRYVVVGAVVAAAIVTPSTDPLTQVLLAGPLLGLYLGGAWAVKLTGR 130
SGD+MLSVWRYVVVGAVVAAA+VTPSTDPLTQVLLA PLLGLYLGGAW VKL GR
Sbjct: 299 SGDKMLSVWRYVVVGAVVAAAVVTPSTDPLTQVLLAAPLLGLYLGGAWMVKLAGR 353
>pir||G84420 TATC-like protein [imported] - Arabidopsis thaliana
Length = 327
Score = 209 bits (532), Expect = 1e-53
Identities = 104/115 (90%), Positives = 110/115 (95%)
Frame = -3
Query: 474 SYLVLTPAALNFFVDYAEGAVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQFLLGQVGLV 295
SY VLTPAALNFFV+YAEG VESLWSIDQYFEFVLVLMFSTGLSFQVPVIQ LLGQVG+V
Sbjct: 213 SYWVLTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGVV 272
Query: 294 SGDQMLSVWRYVVVGAVVAAAIVTPSTDPLTQVLLAGPLLGLYLGGAWAVKLTGR 130
SGDQMLS+WRYVVVGAVVAAA+VTPSTDP+TQ+LLA PLLGLYLGGAW VKLTGR
Sbjct: 273 SGDQMLSIWRYVVVGAVVAAAVVTPSTDPVTQMLLATPLLGLYLGGAWMVKLTGR 327
>ref|NP_565252.1| TATC-like protein; protein id: At2g01110.1, supported by cDNA:
117779., supported by cDNA: gi_13430519, supported by
cDNA: gi_15004993, supported by cDNA: gi_15810616,
supported by cDNA: gi_4929311 [Arabidopsis thaliana]
gi|11279150|pir||T44583 conserved hypothetical protein
tatC [imported] - Arabidopsis thaliana
gi|4929312|gb|AAD33946.1|AF145045_1 TATC [Arabidopsis
thaliana] gi|13430520|gb|AAK25882.1|AF360172_1 putative
TATC protein [Arabidopsis thaliana]
gi|15004994|dbj|BAB62074.1| cpTatC [Arabidopsis
thaliana] gi|15810617|gb|AAL07196.1| putative TATC
protein [Arabidopsis thaliana]
gi|20197905|gb|AAF18659.2| TATC-like protein
[Arabidopsis thaliana] gi|21537010|gb|AAM61351.1|
TATC-like protein [Arabidopsis thaliana]
Length = 340
Score = 209 bits (532), Expect = 1e-53
Identities = 104/115 (90%), Positives = 110/115 (95%)
Frame = -3
Query: 474 SYLVLTPAALNFFVDYAEGAVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQFLLGQVGLV 295
SY VLTPAALNFFV+YAEG VESLWSIDQYFEFVLVLMFSTGLSFQVPVIQ LLGQVG+V
Sbjct: 226 SYWVLTPAALNFFVNYAEGVVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQLLLGQVGVV 285
Query: 294 SGDQMLSVWRYVVVGAVVAAAIVTPSTDPLTQVLLAGPLLGLYLGGAWAVKLTGR 130
SGDQMLS+WRYVVVGAVVAAA+VTPSTDP+TQ+LLA PLLGLYLGGAW VKLTGR
Sbjct: 286 SGDQMLSIWRYVVVGAVVAAAVVTPSTDPVTQMLLATPLLGLYLGGAWMVKLTGR 340
>dbj|BAB39766.1| OsTATC [Oryza sativa (japonica cultivar-group)]
gi|15408654|dbj|BAB64068.1| OsTATC [Oryza sativa
(japonica cultivar-group)]
Length = 359
Score = 209 bits (531), Expect = 2e-53
Identities = 103/115 (89%), Positives = 110/115 (95%)
Frame = -3
Query: 474 SYLVLTPAALNFFVDYAEGAVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQFLLGQVGLV 295
SY VL PAALNFFV+YA+GAVESLWSIDQYFEFVLVL+FSTGLSFQVPVIQ LLGQVGLV
Sbjct: 245 SYTVLAPAALNFFVNYADGAVESLWSIDQYFEFVLVLLFSTGLSFQVPVIQLLLGQVGLV 304
Query: 294 SGDQMLSVWRYVVVGAVVAAAIVTPSTDPLTQVLLAGPLLGLYLGGAWAVKLTGR 130
S DQMLS+WRYVVVGAVVAAA++TPSTDPLTQ+LLAGPLLGLYLGGAW VKLTGR
Sbjct: 305 SSDQMLSIWRYVVVGAVVAAAVLTPSTDPLTQMLLAGPLLGLYLGGAWMVKLTGR 359
>gb|ZP_00111954.1| hypothetical protein [Nostoc punctiforme]
Length = 264
Score = 159 bits (403), Expect = 1e-38
Identities = 74/115 (64%), Positives = 94/115 (81%)
Frame = -3
Query: 474 SYLVLTPAALNFFVDYAEGAVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQFLLGQVGLV 295
+YL+L PAAL FF+ Y VE LWSID+YFEFVL+L+FSTGL+FQ+P+IQ LLG + +V
Sbjct: 150 AYLLLIPAALKFFISYGADVVEQLWSIDKYFEFVLLLLFSTGLAFQIPIIQLLLGNLNIV 209
Query: 294 SGDQMLSVWRYVVVGAVVAAAIVTPSTDPLTQVLLAGPLLGLYLGGAWAVKLTGR 130
S ++M+S WRYV++GAVV A++TPSTDPLTQ LLAG +LGLY GG VKLTG+
Sbjct: 210 SSERMVSGWRYVIMGAVVLGAVLTPSTDPLTQSLLAGAVLGLYFGGVGLVKLTGK 264
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 415,236,904
Number of Sequences: 1393205
Number of extensions: 8978067
Number of successful extensions: 23754
Number of sequences better than 10.0: 155
Number of HSP's better than 10.0 without gapping: 22319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23504
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13106568690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
