Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014864A_C01 KMC014864A_c01
(480 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_767161.1| blr0521 [Bradyrhizobium japonicum] gi|27348769|... 46 2e-04
gb|EAA01364.1| agCP12605 [Anopheles gambiae str. PEST] 45 3e-04
ref|NP_176303.1| hypothetical protein; protein id: At1g61080.1 [... 45 4e-04
pir||T49482 hypothetical protein B14D6.340 [imported] - Neurospo... 45 4e-04
ref|NP_195678.1| hypothetical protein; protein id: At4g39680.1 [... 44 7e-04
>ref|NP_767161.1| blr0521 [Bradyrhizobium japonicum] gi|27348769|dbj|BAC45786.1|
blr0521 [Bradyrhizobium japonicum USDA 110]
Length = 745
Score = 45.8 bits (107), Expect = 2e-04
Identities = 23/51 (45%), Positives = 24/51 (46%)
Frame = -2
Query: 431 PPPPPLPPHVAMGMSMPSPQPAQPQQQSPPGFYRPSGMGFYGQSHPSTPPP 279
PPPPP PP P P PA P+Q SPP P Q H TPPP
Sbjct: 95 PPPPPPPPAARPAPPPPPPPPAAPKQPSPPPAAAP-------QQHAPTPPP 138
Score = 36.2 bits (82), Expect = 0.19
Identities = 18/50 (36%), Positives = 24/50 (48%)
Frame = -2
Query: 428 PPPPLPPHVAMGMSMPSPQPAQPQQQSPPGFYRPSGMGFYGQSHPSTPPP 279
PPPP PP + P+P PA Q +PP P+ + P+ PPP
Sbjct: 136 PPPPAPPAARPAPTPPAPPPAAAPQHAPPPPPPPA-----ARPTPTPPPP 180
Score = 33.1 bits (74), Expect = 1.6
Identities = 19/53 (35%), Positives = 21/53 (38%)
Frame = -2
Query: 431 PPPPPLPPHVAMGMSMPSPQPAQPQQQSPPGFYRPSGMGFYGQSHPSTPPPVS 273
PPPPP P PSP PA QQ P P+ P PPP +
Sbjct: 111 PPPPPAAP------KQPSPPPAAAPQQHAPTPPPPAPPAARPAPTPPAPPPAA 157
Score = 32.0 bits (71), Expect = 3.6
Identities = 19/53 (35%), Positives = 22/53 (40%), Gaps = 2/53 (3%)
Frame = -2
Query: 431 PPPPPLPPH--VAMGMSMPSPQPAQPQQQSPPGFYRPSGMGFYGQSHPSTPPP 279
PPP PPH A + P+PA P PP RP+ P PPP
Sbjct: 70 PPPAAAPPHPPAAPPPAAAPPRPAAPPPPPPPPAARPA---------PPPPPP 113
>gb|EAA01364.1| agCP12605 [Anopheles gambiae str. PEST]
Length = 1007
Score = 45.4 bits (106), Expect = 3e-04
Identities = 31/83 (37%), Positives = 35/83 (41%), Gaps = 18/83 (21%)
Frame = -2
Query: 473 MAGGIPYGYGSNSLPPPPPLPPHVAMGMS---------MPSPQPAQPQQQSP-PGFYRP- 327
+ GGIP GYG+ PPPPP PP GM + P P P+ SP G P
Sbjct: 245 LGGGIPAGYGAAGQPPPPPGPPATGRGMGGTTTARAGVLLPPLPTVPRNDSPLRGSSAPQ 304
Query: 326 -------SGMGFYGQSHPSTPPP 279
G G G S ST PP
Sbjct: 305 RNDSPQSKGGGEGGSSTTSTAPP 327
>ref|NP_176303.1| hypothetical protein; protein id: At1g61080.1 [Arabidopsis
thaliana] gi|25404307|pir||E96636 hypothetical protein
T7P1.21 [imported] - Arabidopsis thaliana
gi|12323348|gb|AAG51656.1|AC018908_22 hypothetical
protein; 92104-88279 [Arabidopsis thaliana]
Length = 907
Score = 45.1 bits (105), Expect = 4e-04
Identities = 23/56 (41%), Positives = 26/56 (46%)
Frame = -2
Query: 446 GSNSLPPPPPLPPHVAMGMSMPSPQPAQPQQQSPPGFYRPSGMGFYGQSHPSTPPP 279
G+ + PPPPP PP P P P Q + SPP P MG G P PPP
Sbjct: 544 GTAAAPPPPPPPPGTQAAPPPPPPPPMQNRAPSPP----PMPMGNSGSGGPPPPPP 595
Score = 38.1 bits (87), Expect = 0.050
Identities = 19/55 (34%), Positives = 22/55 (39%)
Frame = -2
Query: 431 PPPPPLPPHVAMGMSMPSPQPAQPQQQSPPGFYRPSGMGFYGQSHPSTPPPVSRQ 267
PPPPP PP A+ P P P PP P G P PPP+ +
Sbjct: 523 PPPPPPPPRAAVAPPPPPPPPGTAAAPPPP----PPPPGTQAAPPPPPPPPMQNR 573
Score = 35.0 bits (79), Expect = 0.42
Identities = 20/52 (38%), Positives = 23/52 (43%)
Frame = -2
Query: 434 LPPPPPLPPHVAMGMSMPSPQPAQPQQQSPPGFYRPSGMGFYGQSHPSTPPP 279
LP PPP PP + +SMP P P P PP P H + PPP
Sbjct: 437 LPSPPPTPPIADIAISMPPPPPPPP----PPPAVMP-------LKHFAPPPP 477
Score = 34.3 bits (77), Expect = 0.72
Identities = 22/67 (32%), Positives = 28/67 (40%), Gaps = 3/67 (4%)
Frame = -2
Query: 461 IPYGYGSNSLPPPPPLPPHVAMGMSMPSPQPAQPQQQSPPGFYRP---SGMGFYGQSHPS 291
+P G + PPPPP P +A G + P P P G P GM G + P
Sbjct: 580 MPMGNSGSGGPPPPPPPMPLANGATPPPPPPPMAMANGAAGPPPPPPRMGMA-NGAAGPP 638
Query: 290 TPPPVSR 270
PP +R
Sbjct: 639 PPPGAAR 645
Score = 34.3 bits (77), Expect = 0.72
Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 8/59 (13%)
Frame = -2
Query: 431 PPPPPLPPHVAMGMSMPSPQPAQP--------QQQSPPGFYRPSGMGFYGQSHPSTPPP 279
PPPPP PP M + +P P P + +PP P+ G + P PPP
Sbjct: 456 PPPPPPPPPAVMPLKHFAPPPPPPLPPAVMPLKHFAPPPPTPPAFKPLKGSAPPPPPPP 514
Score = 33.5 bits (75), Expect = 1.2
Identities = 20/57 (35%), Positives = 23/57 (40%)
Frame = -2
Query: 437 SLPPPPPLPPHVAMGMSMPSPQPAQPQQQSPPGFYRPSGMGFYGQSHPSTPPPVSRQ 267
S PPPPP PP + P P P +PP P G + P PPP Q
Sbjct: 506 SAPPPPPPPPLPTTIAAPPPPPPPPRAAVAPPPPPPPPGT---AAAPPPPPPPPGTQ 559
>pir||T49482 hypothetical protein B14D6.340 [imported] - Neurospora crassa
gi|7899338|emb|CAB91743.1| hypothetical protein
[Neurospora crassa] gi|28925326|gb|EAA34404.1|
hypothetical protein ( hypothetical protein B14D6.340
[imported] - Neurospora crassa )
Length = 1176
Score = 45.1 bits (105), Expect = 4e-04
Identities = 24/51 (47%), Positives = 27/51 (52%)
Frame = -2
Query: 431 PPPPPLPPHVAMGMSMPSPQPAQPQQQSPPGFYRPSGMGFYGQSHPSTPPP 279
PPPPP PP A G MP QP QQ PP P+ G + S P+ PPP
Sbjct: 976 PPPPPPPPPSARGRQMPPIQPGPSPQQPPP----PASWG-HPTSGPTLPPP 1021
>ref|NP_195678.1| hypothetical protein; protein id: At4g39680.1 [Arabidopsis
thaliana] gi|7487219|pir||T05005 hypothetical protein
T19P19.70 - Arabidopsis thaliana
gi|3080437|emb|CAA18754.1| putative protein [Arabidopsis
thaliana] gi|7270952|emb|CAB80631.1| putative protein
[Arabidopsis thaliana]
Length = 633
Score = 44.3 bits (103), Expect = 7e-04
Identities = 18/34 (52%), Positives = 23/34 (66%), Gaps = 2/34 (5%)
Frame = -2
Query: 437 SLPPPPPL--PPHVAMGMSMPSPQPAQPQQQSPP 342
+LPPPPPL PPHV + +P P P P++Q PP
Sbjct: 563 ALPPPPPLAKPPHVVERLPLPPPPPIAPEEQEPP 596
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 472,278,251
Number of Sequences: 1393205
Number of extensions: 12297599
Number of successful extensions: 109687
Number of sequences better than 10.0: 1952
Number of HSP's better than 10.0 without gapping: 56209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89229
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13397825772
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
