Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014859A_C01 KMC014859A_c01
(479 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL38006.1|AF443117_1 LIM domain protein [Gossypium hirsutum] 121 4e-27
ref|NP_191136.1| transcription factor L2; protein id: At3g55770.... 115 2e-25
ref|NP_680133.1| transcription factor L2; protein id: At3g55770.... 115 2e-25
ref|NP_181519.1| putative LIM-domain protein; protein id: At2g39... 115 3e-25
pir||T03400 probable transcription factor SF3 - common tobacco g... 110 1e-23
>gb|AAL38006.1|AF443117_1 LIM domain protein [Gossypium hirsutum]
Length = 189
Score = 121 bits (303), Expect = 4e-27
Identities = 55/59 (93%), Positives = 58/59 (98%)
Frame = -2
Query: 478 SCFKCSHGGCPITPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASIKRAAASVPES 302
SCFKCSHGGC ++PSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASIKRAAASVPE+
Sbjct: 131 SCFKCSHGGCSLSPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASIKRAAASVPEA 189
Score = 57.4 bits (137), Expect = 8e-08
Identities = 28/58 (48%), Positives = 37/58 (63%)
Frame = -2
Query: 478 SCFKCSHGGCPITPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASIKRAAASVPE 305
SC KCSH + +NY+++EG+LYCK HF QLFKE G++N + S K A PE
Sbjct: 33 SCSKCSHCKGTLKLANYSSMEGVLYCKPHFEQLFKETGNFNKDFQ-LSAKAAEKLTPE 89
>ref|NP_191136.1| transcription factor L2; protein id: At3g55770.1, supported by
cDNA: 105441., supported by cDNA: gi_17380935, supported
by cDNA: gi_20258944 [Arabidopsis thaliana]
gi|11282609|pir||T47716 transcription factor L2 -
Arabidopsis thaliana gi|7263565|emb|CAB81602.1|
transcription factor L2 [Arabidopsis thaliana]
gi|17380936|gb|AAL36280.1| putative transcription factor
L2 [Arabidopsis thaliana] gi|20258945|gb|AAM14188.1|
putative transcription factor L2 [Arabidopsis thaliana]
gi|21536610|gb|AAM60942.1| transcription factor L2
[Arabidopsis thaliana]
Length = 199
Score = 115 bits (289), Expect = 2e-25
Identities = 56/69 (81%), Positives = 59/69 (85%), Gaps = 10/69 (14%)
Frame = -2
Query: 478 SCFKCSHGGCPITPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASIKRA-------- 323
SCFKCSHGGCPI+PSNYAALEGILYCKHHF+QLFKEKGSYNHLIKSASIKR+
Sbjct: 131 SCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIKRSAAAAVAAG 190
Query: 322 --AASVPES 302
AASVPES
Sbjct: 191 VPAASVPES 199
Score = 63.5 bits (153), Expect = 1e-09
Identities = 30/58 (51%), Positives = 40/58 (68%)
Frame = -2
Query: 478 SCFKCSHGGCPITPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASIKRAAASVPE 305
SCFKC+H + S+Y+++EG+LYCK HF QLFKE GS+N +S + K A S PE
Sbjct: 33 SCFKCTHCKSRLQLSSYSSMEGVLYCKPHFEQLFKESGSFNKNFQSPA-KSADKSTPE 89
>ref|NP_680133.1| transcription factor L2; protein id: At3g55770.2, supported by
cDNA: gi_13926202 [Arabidopsis thaliana]
gi|13926203|gb|AAK49580.1|AF370574_1 transcription
factor L2 [Arabidopsis thaliana]
Length = 148
Score = 115 bits (289), Expect = 2e-25
Identities = 56/69 (81%), Positives = 59/69 (85%), Gaps = 10/69 (14%)
Frame = -2
Query: 478 SCFKCSHGGCPITPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASIKRA-------- 323
SCFKCSHGGCPI+PSNYAALEGILYCKHHF+QLFKEKGSYNHLIKSASIKR+
Sbjct: 80 SCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIKRSAAAAVAAG 139
Query: 322 --AASVPES 302
AASVPES
Sbjct: 140 VPAASVPES 148
Score = 45.8 bits (107), Expect = 2e-04
Identities = 22/39 (56%), Positives = 27/39 (68%)
Frame = -2
Query: 421 LEGILYCKHHFSQLFKEKGSYNHLIKSASIKRAAASVPE 305
+EG+LYCK HF QLFKE GS+N +S + K A S PE
Sbjct: 1 MEGVLYCKPHFEQLFKESGSFNKNFQSPA-KSADKSTPE 38
>ref|NP_181519.1| putative LIM-domain protein; protein id: At2g39900.1, supported by
cDNA: gi_20453155 [Arabidopsis thaliana]
gi|25354701|pir||G84822 probable LIM-domain protein
[imported] - Arabidopsis thaliana
gi|2088643|gb|AAB95275.1| putative LIM-domain protein
[Arabidopsis thaliana] gi|20453156|gb|AAM19819.1|
At2g39900/T28M21.6 [Arabidopsis thaliana]
gi|21689625|gb|AAM67434.1| At2g39900/T28M21.6
[Arabidopsis thaliana]
Length = 200
Score = 115 bits (287), Expect = 3e-25
Identities = 52/66 (78%), Positives = 58/66 (87%)
Frame = -2
Query: 478 SCFKCSHGGCPITPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASIKRAAASVPES* 299
SCFKCSHGGCPI+PSNYAALEGILYCKHHF+QLFKEKGSYNHLIKSASIKRA A+ +
Sbjct: 132 SCFKCSHGGCPISPSNYAALEGILYCKHHFAQLFKEKGSYNHLIKSASIKRATAAATAAA 191
Query: 298 LLVSCI 281
V+ +
Sbjct: 192 AAVAAV 197
Score = 58.5 bits (140), Expect = 4e-08
Identities = 25/58 (43%), Positives = 37/58 (63%)
Frame = -2
Query: 478 SCFKCSHGGCPITPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASIKRAAASVPE 305
+CFKCSH + SNY+++EG++YC+ HF QLFKE GS++ +S + PE
Sbjct: 33 ACFKCSHCKSRLQLSNYSSMEGVVYCRPHFEQLFKESGSFSKNFQSPAKPLTDKPTPE 90
>pir||T03400 probable transcription factor SF3 - common tobacco
gi|1841464|emb|CAA71891.1| LIM-domain SF3 protein
[Nicotiana tabacum] gi|5932420|gb|AAD56951.1|AF184886_1
LIM domain protein WLIM2 [Nicotiana tabacum]
Length = 189
Score = 110 bits (274), Expect = 1e-23
Identities = 49/59 (83%), Positives = 55/59 (93%)
Frame = -2
Query: 478 SCFKCSHGGCPITPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASIKRAAASVPES 302
+CFKCSHGGC ++PSNYAAL GILYCK HFSQLFKEKGSYNHLIKSAS+KR AA+VP+S
Sbjct: 131 TCFKCSHGGCSLSPSNYAALNGILYCKPHFSQLFKEKGSYNHLIKSASMKRPAATVPDS 189
Score = 61.6 bits (148), Expect = 4e-09
Identities = 29/58 (50%), Positives = 39/58 (67%)
Frame = -2
Query: 478 SCFKCSHGGCPITPSNYAALEGILYCKHHFSQLFKEKGSYNHLIKSASIKRAAASVPE 305
SCFKCSH + SN++++EG+LYCK HF QLFKE G++N +S + K A PE
Sbjct: 33 SCFKCSHCKGTLKLSNFSSMEGVLYCKPHFEQLFKESGNFNKNFQSPA-KSAEKLTPE 89
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 389,174,981
Number of Sequences: 1393205
Number of extensions: 7693727
Number of successful extensions: 20507
Number of sequences better than 10.0: 81
Number of HSP's better than 10.0 without gapping: 19811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20498
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13397825772
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
