Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014851A_C01 KMC014851A_c01
(595 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO16018.1| biogenesis protein [Lotus japonicus] 150 1e-35
gb|AAO16019.1| biogenesis protein [Hordeum vulgare subsp. vulgare] 135 3e-31
ref|NP_200240.1| cytochrome c biogenesis protein precursor (gb|A... 133 2e-30
gb|AAM64755.1| cytochrome c biogenesis protein precursor [Arabid... 133 2e-30
gb|AAK93606.1| putative cytochrome c biogenesis protein precurso... 133 2e-30
>gb|AAO16018.1| biogenesis protein [Lotus japonicus]
Length = 345
Score = 150 bits (379), Expect = 1e-35
Identities = 76/76 (100%), Positives = 76/76 (100%)
Frame = -2
Query: 594 VAASKDPVIGGSLLLTYTTGYIAPLLLAASFAGALQSLLSFRKYSAWINPISGAMLLGGG 415
VAASKDPVIGGSLLLTYTTGYIAPLLLAASFAGALQSLLSFRKYSAWINPISGAMLLGGG
Sbjct: 270 VAASKDPVIGGSLLLTYTTGYIAPLLLAASFAGALQSLLSFRKYSAWINPISGAMLLGGG 329
Query: 414 VYTFLDKLFPATTMAM 367
VYTFLDKLFPATTMAM
Sbjct: 330 VYTFLDKLFPATTMAM 345
>gb|AAO16019.1| biogenesis protein [Hordeum vulgare subsp. vulgare]
Length = 344
Score = 135 bits (341), Expect = 3e-31
Identities = 64/76 (84%), Positives = 71/76 (93%)
Frame = -2
Query: 594 VAASKDPVIGGSLLLTYTTGYIAPLLLAASFAGALQSLLSFRKYSAWINPISGAMLLGGG 415
VA S+DP++GGSLLLTYTTGY+APLL+AASFAGALQSLLSFR+YS WINPISGA LLGGG
Sbjct: 269 VATSRDPIVGGSLLLTYTTGYVAPLLIAASFAGALQSLLSFRRYSTWINPISGAFLLGGG 328
Query: 414 VYTFLDKLFPATTMAM 367
VYT LDKLFPAT+M M
Sbjct: 329 VYTLLDKLFPATSMVM 344
>ref|NP_200240.1| cytochrome c biogenesis protein precursor (gb|AAF35369.1); protein
id: At5g54290.1, supported by cDNA: 32771., supported by
cDNA: gi_15292990, supported by cDNA: gi_7021485
[Arabidopsis thaliana] gi|7021486|gb|AAF35369.1|
putative cytochrome c biogenesis protein precursor
[Arabidopsis thaliana] gi|9759502|dbj|BAB10752.1|
cytochrome c biogenesis protein precursor [Arabidopsis
thaliana] gi|23297361|gb|AAN12950.1| cytochrome c
biogenesis protein precursor [Arabidopsis thaliana]
Length = 354
Score = 133 bits (334), Expect = 2e-30
Identities = 64/76 (84%), Positives = 71/76 (93%)
Frame = -2
Query: 594 VAASKDPVIGGSLLLTYTTGYIAPLLLAASFAGALQSLLSFRKYSAWINPISGAMLLGGG 415
VA S+DPVIGGSLLLTYTTGY+APL++AASFAGALQSLLS RK SAWINPISGA+LLGGG
Sbjct: 279 VATSRDPVIGGSLLLTYTTGYVAPLIVAASFAGALQSLLSLRKVSAWINPISGALLLGGG 338
Query: 414 VYTFLDKLFPATTMAM 367
+YTFLD+LFPA TM M
Sbjct: 339 LYTFLDRLFPAATMVM 354
>gb|AAM64755.1| cytochrome c biogenesis protein precursor [Arabidopsis thaliana]
Length = 354
Score = 133 bits (334), Expect = 2e-30
Identities = 64/76 (84%), Positives = 71/76 (93%)
Frame = -2
Query: 594 VAASKDPVIGGSLLLTYTTGYIAPLLLAASFAGALQSLLSFRKYSAWINPISGAMLLGGG 415
VA S+DPVIGGSLLLTYTTGY+APL++AASFAGALQSLLS RK SAWINPISGA+LLGGG
Sbjct: 279 VATSRDPVIGGSLLLTYTTGYVAPLIVAASFAGALQSLLSLRKVSAWINPISGALLLGGG 338
Query: 414 VYTFLDKLFPATTMAM 367
+YTFLD+LFPA TM M
Sbjct: 339 LYTFLDRLFPAATMVM 354
>gb|AAK93606.1| putative cytochrome c biogenesis protein precursor [Arabidopsis
thaliana]
Length = 354
Score = 133 bits (334), Expect = 2e-30
Identities = 64/76 (84%), Positives = 71/76 (93%)
Frame = -2
Query: 594 VAASKDPVIGGSLLLTYTTGYIAPLLLAASFAGALQSLLSFRKYSAWINPISGAMLLGGG 415
VA S+DPVIGGSLLLTYTTGY+APL++AASFAGALQSLLS RK SAWINPISGA+LLGGG
Sbjct: 279 VATSRDPVIGGSLLLTYTTGYVAPLIVAASFAGALQSLLSLRKVSAWINPISGALLLGGG 338
Query: 414 VYTFLDKLFPATTMAM 367
+YTFLD+LFPA TM M
Sbjct: 339 LYTFLDRLFPAATMVM 354
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 542,551,032
Number of Sequences: 1393205
Number of extensions: 11645472
Number of successful extensions: 27325
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 26399
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27298
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
