Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014845A_C01 KMC014845A_c01
(859 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568300.1| putative protein; protein id: At5g14370.1, supp... 46 6e-04
ref|NP_297916.1| hypothetical protein [Xylella fastidiosa 9a5c] ... 41 0.020
gb|AAM34313.2| similar to Dictyostelium discoideum (Slime mold).... 40 0.044
gb|AAK92097.1|AF361947_1 SgcA [Dictyostelium discoideum] 40 0.044
ref|NP_651479.1| CG14237-PA [Drosophila melanogaster] gi|7301470... 38 0.17
>ref|NP_568300.1| putative protein; protein id: At5g14370.1, supported by cDNA:
19906., supported by cDNA: gi_15292916, supported by
cDNA: gi_20259038 [Arabidopsis thaliana]
gi|15292917|gb|AAK92829.1| unknown protein [Arabidopsis
thaliana] gi|20259039|gb|AAM14235.1| unknown protein
[Arabidopsis thaliana]
Length = 339
Score = 46.2 bits (108), Expect = 6e-04
Identities = 29/87 (33%), Positives = 47/87 (53%)
Frame = +1
Query: 595 MCNKNSPTQTSEATQTTNSIMKKKTQKQHIKKELLSSSSSSSSSSLKPHRRRNRTKTRKP 774
MC+ + E Q+T S + K +K +E ++ SSS+L R+ RTKT+KP
Sbjct: 1 MCSNKASPVVGEEKQSTRSSKRIKKRKN---REATTTMEDKSSSNLDASRKI-RTKTKKP 56
Query: 775 KYLSLRLQLSQSQQPEPESESLTHQQK 855
K+LSL+L+L+ S + S ++K
Sbjct: 57 KFLSLKLELNTSHEINENPRSKKSKKK 83
>ref|NP_297916.1| hypothetical protein [Xylella fastidiosa 9a5c]
gi|11361512|pir||H82781 hypothetical protein XF0626
[imported] - Xylella fastidiosa (strain 9a5c)
gi|9105500|gb|AAF83436.1|AE003908_4 hypothetical protein
[Xylella fastidiosa 9a5c]
Length = 203
Score = 41.2 bits (95), Expect = 0.020
Identities = 26/63 (41%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Frame = +2
Query: 275 SSHKTKSR*HYNPHS*PITP------PHVSCRQYITSHHPLMTQDGPSPKTLHLFPHYSH 436
+SH T H PH+ +TP PH S ++T H +T P TLHL PH SH
Sbjct: 114 TSHLTPHTSHLTPHTSHLTPHTSHLTPHTS---HLTPHTSHLT-----PHTLHLTPHTSH 165
Query: 437 LTP 445
LTP
Sbjct: 166 LTP 168
Score = 38.9 bits (89), Expect = 0.099
Identities = 25/63 (39%), Positives = 31/63 (48%), Gaps = 6/63 (9%)
Frame = +2
Query: 275 SSHKTKSR*HYNPHS*PITP------PHVSCRQYITSHHPLMTQDGPSPKTLHLFPHYSH 436
+SH T H PH+ +TP PH S ++T H +T P T HL PH SH
Sbjct: 58 TSHLTPHTSHLTPHTSHLTPHTSHLTPHTS---HLTPHTSHLT-----PHTSHLTPHTSH 109
Query: 437 LTP 445
LTP
Sbjct: 110 LTP 112
Score = 38.9 bits (89), Expect = 0.099
Identities = 25/63 (39%), Positives = 31/63 (48%), Gaps = 6/63 (9%)
Frame = +2
Query: 275 SSHKTKSR*HYNPHS*PITP------PHVSCRQYITSHHPLMTQDGPSPKTLHLFPHYSH 436
+SH T H PH+ +TP PH S ++T H +T P T HL PH SH
Sbjct: 65 TSHLTPHTSHLTPHTSHLTPHTSHLTPHTS---HLTPHTSHLT-----PHTSHLTPHTSH 116
Query: 437 LTP 445
LTP
Sbjct: 117 LTP 119
Score = 38.9 bits (89), Expect = 0.099
Identities = 25/63 (39%), Positives = 31/63 (48%), Gaps = 6/63 (9%)
Frame = +2
Query: 275 SSHKTKSR*HYNPHS*PITP------PHVSCRQYITSHHPLMTQDGPSPKTLHLFPHYSH 436
+SH T H PH+ +TP PH S ++T H +T P T HL PH SH
Sbjct: 72 TSHLTPHTSHLTPHTSHLTPHTSHLTPHTS---HLTPHTSHLT-----PHTSHLTPHTSH 123
Query: 437 LTP 445
LTP
Sbjct: 124 LTP 126
Score = 38.9 bits (89), Expect = 0.099
Identities = 25/63 (39%), Positives = 31/63 (48%), Gaps = 6/63 (9%)
Frame = +2
Query: 275 SSHKTKSR*HYNPHS*PITP------PHVSCRQYITSHHPLMTQDGPSPKTLHLFPHYSH 436
+SH T H PH+ +TP PH S ++T H +T P T HL PH SH
Sbjct: 44 TSHLTPHTSHLTPHTSHLTPHTSHLTPHTS---HLTPHTSHLT-----PHTSHLTPHTSH 95
Query: 437 LTP 445
LTP
Sbjct: 96 LTP 98
Score = 38.9 bits (89), Expect = 0.099
Identities = 25/63 (39%), Positives = 31/63 (48%), Gaps = 6/63 (9%)
Frame = +2
Query: 275 SSHKTKSR*HYNPHS*PITP------PHVSCRQYITSHHPLMTQDGPSPKTLHLFPHYSH 436
+SH T H PH+ +TP PH S ++T H +T P T HL PH SH
Sbjct: 142 TSHLTPHTSHLTPHTLHLTPHTSHLTPHTS---HLTPHTSHLT-----PHTSHLTPHTSH 193
Query: 437 LTP 445
LTP
Sbjct: 194 LTP 196
Score = 32.3 bits (72), Expect = 9.3
Identities = 22/57 (38%), Positives = 29/57 (50%)
Frame = +2
Query: 275 SSHKTKSR*HYNPHS*PITPPHVSCRQYITSHHPLMTQDGPSPKTLHLFPHYSHLTP 445
+SH + PH+ +TP H S ++T H +T P T HL PH SHLTP
Sbjct: 30 TSHLIPHTSYLIPHTSHLTP-HTS---HLTPHTSHLT-----PHTSHLTPHTSHLTP 77
>gb|AAM34313.2| similar to Dictyostelium discoideum (Slime mold). SgcA
Length = 656
Score = 40.0 bits (92), Expect = 0.044
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Frame = +1
Query: 601 NKNSPTQTSEATQTTNSIMKKKTQKQHIKKELLSSSSSSSSSSLKPHRRRNRTKTRKPKY 780
N NS +S ++ T++S + Q LLSS S SSS +LK H+ N
Sbjct: 123 NNNSNNNSSLSSSTSSSPNQSSPQTNRRSAGLLSSYSPSSSPNLKSHQMNNNNNNNNNNQ 182
Query: 781 LSLRLQLSQSQQPEP----------ESESLTHQQKT 858
LS L L S+ E + E L+H++K+
Sbjct: 183 LSQSLFLLDSKSIEKMVKEECFGIIDPEELSHEEKS 218
>gb|AAK92097.1|AF361947_1 SgcA [Dictyostelium discoideum]
Length = 2843
Score = 40.0 bits (92), Expect = 0.044
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 10/96 (10%)
Frame = +1
Query: 601 NKNSPTQTSEATQTTNSIMKKKTQKQHIKKELLSSSSSSSSSSLKPHRRRNRTKTRKPKY 780
N NS +S ++ T++S + Q LLSS S SSS +LK H+ N
Sbjct: 123 NNNSNNNSSLSSSTSSSPNQSSPQTNRRSAGLLSSYSPSSSPNLKSHQMNNNNNNNNNNQ 182
Query: 781 LSLRLQLSQSQQPEP----------ESESLTHQQKT 858
LS L L S+ E + E L+H++K+
Sbjct: 183 LSQSLFLLDSKSIEKMVKEECFGIIDPEELSHEEKS 218
>ref|NP_651479.1| CG14237-PA [Drosophila melanogaster] gi|7301470|gb|AAF56594.1|
CG14237-PA [Drosophila melanogaster]
Length = 195
Score = 38.1 bits (87), Expect = 0.17
Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Frame = +1
Query: 583 IGIHMC----NKNSPTQTSEATQTTNSIMKKKTQKQHIKKELLSSSSSSSSSSLKPHRRR 750
+ I +C N +SPT T T TT+S T ++SSSSSSSS K HR+R
Sbjct: 85 LAISLCIWATNASSPTTTETTTTTTDS--DTTTTTTAATTTTTTASSSSSSSSSKVHRKR 142
Query: 751 NRTKTRK 771
R K K
Sbjct: 143 FRIKNLK 149
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 790,622,065
Number of Sequences: 1393205
Number of extensions: 19572792
Number of successful extensions: 111147
Number of sequences better than 10.0: 111
Number of HSP's better than 10.0 without gapping: 74267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103632
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 45431072631
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
