Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014839A_C01 KMC014839A_c01
(531 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T01744 ribosomal protein L17, chloroplast - common tobacco ... 147 1e-34
gb|AAM63452.1| ribosomal protein L17-like protein [Arabidopsis t... 144 6e-34
ref|NP_190989.1| ribosomal protein L17 -like protein; protein id... 144 6e-34
gb|ZP_00106115.1| hypothetical protein [Nostoc punctiforme] 108 3e-23
ref|NP_488230.1| 50S ribosomal protein L17 [Nostoc sp. PCC 7120]... 108 3e-23
>pir||T01744 ribosomal protein L17, chloroplast - common tobacco
gi|3298443|dbj|BAA31512.1| chloroplast ribosomal protein
L17 [Nicotiana tabacum]
Length = 205
Score = 147 bits (370), Expect = 1e-34
Identities = 70/73 (95%), Positives = 73/73 (99%)
Frame = -2
Query: 530 IRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVPERYGERNGGYTRIIRTLPR 351
+RKYVDKMIT+AKDGSLHKRRQALGFIYEKQIVHALFAEVP+RYGERNGGYTRIIRTLPR
Sbjct: 133 VRKYVDKMITMAKDGSLHKRRQALGFIYEKQIVHALFAEVPDRYGERNGGYTRIIRTLPR 192
Query: 350 RGDNAPMAYIELV 312
RGDNAPMAYIELV
Sbjct: 193 RGDNAPMAYIELV 205
>gb|AAM63452.1| ribosomal protein L17-like protein [Arabidopsis thaliana]
Length = 203
Score = 144 bits (363), Expect = 6e-34
Identities = 69/73 (94%), Positives = 73/73 (99%)
Frame = -2
Query: 530 IRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVPERYGERNGGYTRIIRTLPR 351
+RK+VDKMITLAKDGSLHKRRQALG+IYEKQIVHALFAEVP+RYGERNGGYTRIIRTLPR
Sbjct: 131 MRKFVDKMITLAKDGSLHKRRQALGYIYEKQIVHALFAEVPDRYGERNGGYTRIIRTLPR 190
Query: 350 RGDNAPMAYIELV 312
RGDNAPMAYIELV
Sbjct: 191 RGDNAPMAYIELV 203
>ref|NP_190989.1| ribosomal protein L17 -like protein; protein id: At3g54210.1,
supported by cDNA: 25166., supported by cDNA:
gi_14030668 [Arabidopsis thaliana]
gi|11276791|pir||T47580 ribosomal protein L17-like
protein - Arabidopsis thaliana
gi|6822067|emb|CAB70995.1| ribosomal protein L17-like
protein [Arabidopsis thaliana]
gi|14030669|gb|AAK53009.1|AF375425_1
AT3g54210/F24B22_170 [Arabidopsis thaliana]
gi|21700779|gb|AAM70513.1| AT3g54210/F24B22_170
[Arabidopsis thaliana] gi|22530904|gb|AAM96956.1|
ribosomal protein L17-like protein [Arabidopsis
thaliana] gi|23198410|gb|AAN15732.1| ribosomal protein
L17-like protein [Arabidopsis thaliana]
Length = 211
Score = 144 bits (363), Expect = 6e-34
Identities = 69/73 (94%), Positives = 73/73 (99%)
Frame = -2
Query: 530 IRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVPERYGERNGGYTRIIRTLPR 351
+RK+VDKMITLAKDGSLHKRRQALG+IYEKQIVHALFAEVP+RYGERNGGYTRIIRTLPR
Sbjct: 139 MRKFVDKMITLAKDGSLHKRRQALGYIYEKQIVHALFAEVPDRYGERNGGYTRIIRTLPR 198
Query: 350 RGDNAPMAYIELV 312
RGDNAPMAYIELV
Sbjct: 199 RGDNAPMAYIELV 211
>gb|ZP_00106115.1| hypothetical protein [Nostoc punctiforme]
Length = 116
Score = 108 bits (271), Expect = 3e-23
Identities = 51/73 (69%), Positives = 63/73 (85%)
Frame = -2
Query: 530 IRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVPERYGERNGGYTRIIRTLPR 351
+R V+KMITLAK+GSL RR+ALG+I++KQ+VHALF +VP RYG+R GGYTRI+ T+PR
Sbjct: 44 LRSEVEKMITLAKNGSLAARREALGYIFDKQLVHALFEQVPTRYGDRQGGYTRILHTVPR 103
Query: 350 RGDNAPMAYIELV 312
RGDNA MA IELV
Sbjct: 104 RGDNAKMAIIELV 116
>ref|NP_488230.1| 50S ribosomal protein L17 [Nostoc sp. PCC 7120]
gi|25295274|pir||AG2329 50S ribosomal protein L17
[imported] - Nostoc sp. (strain PCC 7120)
gi|17133325|dbj|BAB75889.1| 50S ribosomal protein L17
[Nostoc sp. PCC 7120]
Length = 116
Score = 108 bits (271), Expect = 3e-23
Identities = 52/73 (71%), Positives = 61/73 (83%)
Frame = -2
Query: 530 IRKYVDKMITLAKDGSLHKRRQALGFIYEKQIVHALFAEVPERYGERNGGYTRIIRTLPR 351
+R VDK+ITLAKDGSL RR+ALG+IY+KQ+VHALF +V RYG R GGYTRI+ T+PR
Sbjct: 44 VRSEVDKIITLAKDGSLAARRRALGYIYDKQLVHALFEQVSSRYGNRQGGYTRILHTVPR 103
Query: 350 RGDNAPMAYIELV 312
RGDNA MA IELV
Sbjct: 104 RGDNAEMAIIELV 116
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 436,596,008
Number of Sequences: 1393205
Number of extensions: 9080052
Number of successful extensions: 22045
Number of sequences better than 10.0: 163
Number of HSP's better than 10.0 without gapping: 21440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21998
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
