Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014814A_C01 KMC014814A_c01
(572 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB90733.1| putative laccase [Oryza sativa (japonica cultiva... 235 3e-61
pir||T48347 laccase-like protein F15A17.290 [similarity] - Arabi... 224 5e-58
ref|NP_195946.2| laccase (diphenol oxidase), putative; protein i... 224 5e-58
gb|AAK37829.1|AF132125_1 laccase [Pinus taeda] 210 1e-53
gb|AAK37830.1|AF132126_1 laccase [Pinus taeda] 209 2e-53
>dbj|BAB90733.1| putative laccase [Oryza sativa (japonica cultivar-group)]
Length = 562
Score = 235 bits (600), Expect = 3e-61
Identities = 105/121 (86%), Positives = 112/121 (91%)
Frame = -1
Query: 572 VAFNSTVELVLQDTNLLSVESHPFHLHGYNFFVVGTGVGNFDPSKDPAKYNLVDPVERNT 393
+A+N+TVELVLQDTNLLSVESHPFHLHGYNFFVVG GVGNFDP+KDPAKYNLVDP ERNT
Sbjct: 442 IAYNATVELVLQDTNLLSVESHPFHLHGYNFFVVGRGVGNFDPAKDPAKYNLVDPPERNT 501
Query: 392 VGVPTGGWTAIRFRADNPGVWFFHCHLELHTGWGLKTAFVVEDGPGQDQSVLPPPKDLPA 213
VGVP GGWTAIRFRADNPGVWF HCHLE+HT WGLK AF+VEDG G D+SVLPPPKDLP
Sbjct: 502 VGVPAGGWTAIRFRADNPGVWFLHCHLEVHTSWGLKMAFLVEDGSGPDESVLPPPKDLPK 561
Query: 212 C 210
C
Sbjct: 562 C 562
>pir||T48347 laccase-like protein F15A17.290 [similarity] - Arabidopsis thaliana
gi|7413603|emb|CAB86093.1| laccase precursor-like
[Arabidopsis thaliana] gi|9757777|dbj|BAB08386.1|
laccase (diphenol oxidase)-like protein [Arabidopsis
thaliana]
Length = 555
Score = 224 bits (572), Expect = 5e-58
Identities = 101/121 (83%), Positives = 109/121 (89%)
Frame = -1
Query: 572 VAFNSTVELVLQDTNLLSVESHPFHLHGYNFFVVGTGVGNFDPSKDPAKYNLVDPVERNT 393
V FN+T+ELVLQDTNLL+VESHPFHLHGYNFFVVGTGVGNFDP KDPAK+NLVDP ERNT
Sbjct: 435 VKFNTTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGVGNFDPKKDPAKFNLVDPPERNT 494
Query: 392 VGVPTGGWTAIRFRADNPGVWFFHCHLELHTGWGLKTAFVVEDGPGQDQSVLPPPKDLPA 213
VGVPTGGW AIRFRADNPGVWF HCHLE+HT WGLK AFVVE+G + SVLPPPKD P+
Sbjct: 495 VGVPTGGWAAIRFRADNPGVWFMHCHLEVHTMWGLKMAFVVENGETPELSVLPPPKDYPS 554
Query: 212 C 210
C
Sbjct: 555 C 555
>ref|NP_195946.2| laccase (diphenol oxidase), putative; protein id: At5g03260.1,
supported by cDNA: gi_17473694, supported by cDNA:
gi_20148526 [Arabidopsis thaliana]
gi|17473695|gb|AAL38304.1| laccase (diphenol
oxidase)-like protein [Arabidopsis thaliana]
gi|20148527|gb|AAM10154.1| laccase (diphenol
oxidase)-like protein [Arabidopsis thaliana]
Length = 557
Score = 224 bits (572), Expect = 5e-58
Identities = 101/121 (83%), Positives = 109/121 (89%)
Frame = -1
Query: 572 VAFNSTVELVLQDTNLLSVESHPFHLHGYNFFVVGTGVGNFDPSKDPAKYNLVDPVERNT 393
V FN+T+ELVLQDTNLL+VESHPFHLHGYNFFVVGTGVGNFDP KDPAK+NLVDP ERNT
Sbjct: 437 VKFNTTIELVLQDTNLLTVESHPFHLHGYNFFVVGTGVGNFDPKKDPAKFNLVDPPERNT 496
Query: 392 VGVPTGGWTAIRFRADNPGVWFFHCHLELHTGWGLKTAFVVEDGPGQDQSVLPPPKDLPA 213
VGVPTGGW AIRFRADNPGVWF HCHLE+HT WGLK AFVVE+G + SVLPPPKD P+
Sbjct: 497 VGVPTGGWAAIRFRADNPGVWFMHCHLEVHTMWGLKMAFVVENGETPELSVLPPPKDYPS 556
Query: 212 C 210
C
Sbjct: 557 C 557
>gb|AAK37829.1|AF132125_1 laccase [Pinus taeda]
Length = 555
Score = 210 bits (534), Expect = 1e-53
Identities = 91/121 (75%), Positives = 106/121 (87%)
Frame = -1
Query: 572 VAFNSTVELVLQDTNLLSVESHPFHLHGYNFFVVGTGVGNFDPSKDPAKYNLVDPVERNT 393
+ FNSTV+LVLQDT+ L+VE+HP HLHG+NFF+VG G GN++P KDPAK+NLVDP ERNT
Sbjct: 435 IPFNSTVQLVLQDTSALTVENHPVHLHGFNFFIVGRGFGNYNPKKDPAKFNLVDPPERNT 494
Query: 392 VGVPTGGWTAIRFRADNPGVWFFHCHLELHTGWGLKTAFVVEDGPGQDQSVLPPPKDLPA 213
VGVPTGGWT IRFRADNPGVWF HCHLE+HT WGLK AF+VE+G G +QS+LPP KDLP
Sbjct: 495 VGVPTGGWTVIRFRADNPGVWFMHCHLEVHTTWGLKMAFLVENGHGPEQSILPPGKDLPQ 554
Query: 212 C 210
C
Sbjct: 555 C 555
>gb|AAK37830.1|AF132126_1 laccase [Pinus taeda]
Length = 577
Score = 209 bits (533), Expect = 2e-53
Identities = 90/119 (75%), Positives = 104/119 (86%)
Frame = -1
Query: 566 FNSTVELVLQDTNLLSVESHPFHLHGYNFFVVGTGVGNFDPSKDPAKYNLVDPVERNTVG 387
FNSTV+LVLQDT++L+VE+HP HLHG+NFF+VG G GN+DP+ DPA +NLVDP ERNTVG
Sbjct: 459 FNSTVQLVLQDTSVLTVENHPIHLHGFNFFIVGRGFGNYDPNTDPASFNLVDPPERNTVG 518
Query: 386 VPTGGWTAIRFRADNPGVWFFHCHLELHTGWGLKTAFVVEDGPGQDQSVLPPPKDLPAC 210
VPTGGWT IRFRADNPGVWF HCHLE+HT WGLK AF+VE+G G DQS+LPPP D P C
Sbjct: 519 VPTGGWTVIRFRADNPGVWFMHCHLEVHTTWGLKMAFLVENGDGPDQSMLPPPSDFPKC 577
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 530,180,021
Number of Sequences: 1393205
Number of extensions: 12794890
Number of successful extensions: 58144
Number of sequences better than 10.0: 474
Number of HSP's better than 10.0 without gapping: 55716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57704
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
