Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014813A_C01 KMC014813A_c01
(684 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_084828.1| cytochrome b6/f complex subunit IV [Lotus japon... 320 1e-86
ref|NP_054531.1| cytochrome b6/f complex subunit IV [Nicotiana t... 317 1e-85
ref|NP_039416.1| cytochrome b6/f complex subunit IV [Oryza sativ... 316 2e-85
ref|NP_043054.1| cytochrome b6/f complex subunit IV [Zea mays] g... 315 4e-85
ref|NP_051089.1| cytochrome b6/f complex subunit IV [Arabidopsis... 315 4e-85
>ref|NP_084828.1| cytochrome b6/f complex subunit IV [Lotus japonicus]
gi|23821972|sp|Q9BBQ5|PETD_LOTJA Cytochrome B6-F complex
subunit 4 (17 kDa polypeptide)
gi|13359010|dbj|BAB33227.1| cytochrome b/f [Lotus
japonicus]
Length = 160
Score = 320 bits (820), Expect = 1e-86
Identities = 156/158 (98%), Positives = 157/158 (98%)
Frame = -1
Query: 618 ITKKPDLNDPVLRAKXAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMI 439
+TKKPDLNDPVLRAK AKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMI
Sbjct: 3 VTKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMI 62
Query: 438 GEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLVTVPFLENVNKFQN 259
GEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLVTVPFLENVNKFQN
Sbjct: 63 GEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLVTVPFLENVNKFQN 122
Query: 258 PFRRPVATTVFLIGTAVSLWLGIGATLPIEKSLTLGLF 145
PFRRPVATTVFLIGTAVSLWLGIGATLPIEKSLTLGLF
Sbjct: 123 PFRRPVATTVFLIGTAVSLWLGIGATLPIEKSLTLGLF 160
>ref|NP_054531.1| cytochrome b6/f complex subunit IV [Nicotiana tabacum]
gi|28261748|ref|NP_783262.1| cyt b6/f complex subunit IV
[Atropa belladonna] gi|129867|sp|P06249|PETD_TOBAC
Cytochrome B6-F complex subunit 4 (17 kDa polypeptide)
gi|2924273|emb|CAA77425.1| cytochrome b/f complex
subunit IV [Nicotiana tabacum]
gi|10442804|gb|AAG15577.1| cytochrome b/f complex
subunit IV [synthetic construct]
gi|20068362|emb|CAC88075.1| cyt b6/f complex subunit IV
[Atropa belladonna]
Length = 160
Score = 317 bits (811), Expect = 1e-85
Identities = 153/158 (96%), Positives = 157/158 (98%)
Frame = -1
Query: 618 ITKKPDLNDPVLRAKXAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMI 439
+TKKPDLNDPVLRAK AKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMI
Sbjct: 3 VTKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMI 62
Query: 438 GEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLVTVPFLENVNKFQN 259
GEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGL+TVPFLENVNKFQN
Sbjct: 63 GEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQN 122
Query: 258 PFRRPVATTVFLIGTAVSLWLGIGATLPIEKSLTLGLF 145
PFRRPVATTVFLIGTAV+LWLGIGATLPI+KSLTLGLF
Sbjct: 123 PFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 160
>ref|NP_039416.1| cytochrome b6/f complex subunit IV [Oryza sativa (japonica
cultivar-group)] gi|129861|sp|P12118|PETD_ORYSA
Cytochrome B6-F complex subunit 4 (17 kDa polypeptide)
gi|65640|pir||WMRZ17 plastoquinol-plastocyanin reductase
(EC 1.10.99.1) 17K protein - rice chloroplast
gi|669083|emb|CAA33978.1| cytochrome b/f [Oryza sativa
(japonica cultivar-group)]
Length = 160
Score = 316 bits (810), Expect = 2e-85
Identities = 153/158 (96%), Positives = 156/158 (97%)
Frame = -1
Query: 618 ITKKPDLNDPVLRAKXAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMI 439
+TKKPDLNDPVLRAK AKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMI
Sbjct: 3 VTKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMI 62
Query: 438 GEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLVTVPFLENVNKFQN 259
GEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVP GL+TVPFLENVNKFQN
Sbjct: 63 GEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPTGLLTVPFLENVNKFQN 122
Query: 258 PFRRPVATTVFLIGTAVSLWLGIGATLPIEKSLTLGLF 145
PFRRPVATTVFLIGTAV+LWLGIGATLPIEKSLTLGLF
Sbjct: 123 PFRRPVATTVFLIGTAVALWLGIGATLPIEKSLTLGLF 160
>ref|NP_043054.1| cytochrome b6/f complex subunit IV [Zea mays]
gi|1172437|sp|P05643|PETD_MAIZE Cytochrome B6-F complex
subunit 4 (17 kDa polypeptide) gi|1363524|pir||S58582
plastoquinol-plastocyanin reductase (EC 1.10.99.1) 17K
protein - maize chloroplast gi|902252|emb|CAA60316.1|
cytochrome b/f [Zea mays] gi|14495547|gb|AAB29195.2|
PetD [Zea mays]
Length = 160
Score = 315 bits (807), Expect = 4e-85
Identities = 152/158 (96%), Positives = 156/158 (98%)
Frame = -1
Query: 618 ITKKPDLNDPVLRAKXAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMI 439
+TKKPDLNDPVLRAK AKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMI
Sbjct: 3 VTKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMI 62
Query: 438 GEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLVTVPFLENVNKFQN 259
GEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVP GL+TVPFLENVNKFQN
Sbjct: 63 GEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPTGLLTVPFLENVNKFQN 122
Query: 258 PFRRPVATTVFLIGTAVSLWLGIGATLPIEKSLTLGLF 145
PFRRPVATTVFLIGTAV+LWLGIGATLPI+KSLTLGLF
Sbjct: 123 PFRRPVATTVFLIGTAVALWLGIGATLPIDKSLTLGLF 160
>ref|NP_051089.1| cytochrome b6/f complex subunit IV [Arabidopsis thaliana]
gi|6685714|sp|P56774|PETD_ARATH Cytochrome B6-F complex
subunit 4 (17 kDa polypeptide)
gi|5881725|dbj|BAA84416.1| cytochrome b/f [Arabidopsis
thaliana]
Length = 160
Score = 315 bits (807), Expect = 4e-85
Identities = 152/158 (96%), Positives = 156/158 (98%)
Frame = -1
Query: 618 ITKKPDLNDPVLRAKXAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMI 439
+TKKPDLNDPVLRAK AKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMI
Sbjct: 3 VTKKPDLNDPVLRAKLAKGMGHNYYGEPAWPNDLLYIFPVVILGTIACNVGLAVLEPSMI 62
Query: 438 GEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLVTVPFLENVNKFQN 259
GEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGL+TVPFLENVNKFQN
Sbjct: 63 GEPADPFATPLEILPEWYFFPVFQILRTVPNKLLGVLLMVSVPAGLLTVPFLENVNKFQN 122
Query: 258 PFRRPVATTVFLIGTAVSLWLGIGATLPIEKSLTLGLF 145
PFRRPVATTVFLIGTA +LWLGIGATLPI+KSLTLGLF
Sbjct: 123 PFRRPVATTVFLIGTAAALWLGIGATLPIDKSLTLGLF 160
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 619,837,386
Number of Sequences: 1393205
Number of extensions: 14115561
Number of successful extensions: 42900
Number of sequences better than 10.0: 10181
Number of HSP's better than 10.0 without gapping: 41589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42708
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30552968016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
