Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014801A_C01 KMC014801A_c01
(775 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_198982.1| 6-phosphogluconate dehydrogenase; protein id: A... 120 2e-26
gb|AAK49897.1|AF295670_1 plastidic 6-phosphogluconate dehydrogen... 119 4e-26
ref|NP_176601.1| 6-phosphogluconate dehydrogenase, putative; pro... 119 4e-26
gb|AAM61057.1| 6-phosphogluconate dehydrogenase [Arabidopsis tha... 114 1e-24
pir||T01660 probable phosphogluconate dehydrogenase (decarboxyla... 111 1e-23
>ref|NP_198982.1| 6-phosphogluconate dehydrogenase; protein id: At5g41670.1,
supported by cDNA: 109329. [Arabidopsis thaliana]
gi|10178021|dbj|BAB11473.1| 6-phosphogluconate
dehydrogenase [Arabidopsis thaliana]
gi|21928135|gb|AAM78095.1| AT5g41670/MBK23_20
[Arabidopsis thaliana] gi|25090301|gb|AAN72272.1|
At5g41670/MBK23_20 [Arabidopsis thaliana]
Length = 487
Score = 120 bits (302), Expect = 2e-26
Identities = 56/59 (94%), Positives = 57/59 (95%)
Frame = -2
Query: 774 GISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERVDRPGNFHTEWTKLARKS 598
GISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYER DRPG +HTEWTKLARKS
Sbjct: 428 GISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERTDRPGAYHTEWTKLARKS 486
>gb|AAK49897.1|AF295670_1 plastidic 6-phosphogluconate dehydrogenase [Spinacia oleracea]
Length = 537
Score = 119 bits (299), Expect = 4e-26
Identities = 56/65 (86%), Positives = 59/65 (90%)
Frame = -2
Query: 774 GISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERVDRPGNFHTEWTKLARKSG 595
GISTPGMCASLAYFDTYRRARLPANLVQAQRD FGAHTYERVD PG++HTEW+KLARKS
Sbjct: 470 GISTPGMCASLAYFDTYRRARLPANLVQAQRDYFGAHTYERVDLPGSYHTEWSKLARKSD 529
Query: 594 TGVGA 580
V A
Sbjct: 530 PNVAA 534
>ref|NP_176601.1| 6-phosphogluconate dehydrogenase, putative; protein id: At1g64190.1
[Arabidopsis thaliana]
gi|6692095|gb|AAF24560.1|AC007764_2 F22C12.5
[Arabidopsis thaliana] gi|28416567|gb|AAO42814.1|
At1g64190 [Arabidopsis thaliana]
Length = 487
Score = 119 bits (299), Expect = 4e-26
Identities = 55/59 (93%), Positives = 57/59 (96%)
Frame = -2
Query: 774 GISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERVDRPGNFHTEWTKLARKS 598
GISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYER DRPG +HTEWTKLARK+
Sbjct: 428 GISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERTDRPGAYHTEWTKLARKN 486
>gb|AAM61057.1| 6-phosphogluconate dehydrogenase [Arabidopsis thaliana]
Length = 486
Score = 114 bits (286), Expect = 1e-24
Identities = 55/59 (93%), Positives = 56/59 (94%)
Frame = -2
Query: 774 GISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERVDRPGNFHTEWTKLARKS 598
GISTPGMCASLAYFDTYRRARLPANL QAQRDLFGAHTYER DRPG +HTEWTKLARKS
Sbjct: 428 GISTPGMCASLAYFDTYRRARLPANL-QAQRDLFGAHTYERTDRPGAYHTEWTKLARKS 485
>pir||T01660 probable phosphogluconate dehydrogenase (decarboxylating) (EC
1.1.1.44) - maize (fragment) gi|3342804|gb|AAC27704.1|
putative 6-phosphogluconate dehydrogenase [Zea mays]
Length = 77
Score = 111 bits (277), Expect = 1e-23
Identities = 50/59 (84%), Positives = 56/59 (94%)
Frame = -2
Query: 774 GISTPGMCASLAYFDTYRRARLPANLVQAQRDLFGAHTYERVDRPGNFHTEWTKLARKS 598
GISTPGM ASL+YFDTYR +RLPANL+QAQRDLFGAHTYER+D PG+FHTEWTKLAR+S
Sbjct: 14 GISTPGMTASLSYFDTYRSSRLPANLIQAQRDLFGAHTYERIDCPGSFHTEWTKLARRS 72
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 635,051,604
Number of Sequences: 1393205
Number of extensions: 13368200
Number of successful extensions: 50204
Number of sequences better than 10.0: 461
Number of HSP's better than 10.0 without gapping: 48648
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50181
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 38095156112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
