Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014765A_C01 KMC014765A_c01
(515 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pdb|1QRR|A Chain A, Crystal Structure Of Sqd1 Protein Complex Wi... 162 3e-39
ref|NP_195029.1| sulfolipid biosynthesis protein SQD1; protein i... 162 3e-39
gb|AAO39667.1| UDP-sulfoquinovose synthase SQD1 [Spinacia oleracea] 156 1e-37
ref|NP_485784.1| sulfolipid biosynthesis protein [Nostoc sp. PCC... 122 2e-27
ref|NP_440474.1| sulfolipid biosynthesis protein; SqdB [Synechoc... 119 2e-26
>pdb|1QRR|A Chain A, Crystal Structure Of Sqd1 Protein Complex With Nad And
Udp- Glucose
Length = 394
Score = 162 bits (409), Expect = 3e-39
Identities = 76/96 (79%), Positives = 89/96 (92%)
Frame = -2
Query: 514 QFKVSELANLVTKAGEKLGLDVKTMSVPNPRVELEEHYYNCKNTKLIDLGLKPHFLSDSL 335
QF V+ELA+LVTKAG KLGLDVK M+VPNPRVE EEHYYN K+TKL++LGL+PH+LSDSL
Sbjct: 297 QFSVNELASLVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKLMELGLEPHYLSDSL 356
Query: 334 LDSLLNFTVQYKDRVDTKQIMPGVSWRKVGVKTKTV 227
LDSLLNF VQ+KDRVDTKQIMP VSW+K+GVKTK++
Sbjct: 357 LDSLLNFAVQFKDRVDTKQIMPSVSWKKIGVKTKSM 392
>ref|NP_195029.1| sulfolipid biosynthesis protein SQD1; protein id: At4g33030.1,
supported by cDNA: gi_14190482 [Arabidopsis thaliana]
gi|7447130|pir||T05311 sulfolipid biosynthesis protein
SQD1, chloroplast [validated] - Arabidopsis thaliana
gi|2736155|gb|AAB94073.1| sulfolipid biosynthesis
protein [Arabidopsis thaliana]
gi|3688184|emb|CAA21212.1| sulfolipid biosynthesis
protein SQD1 [Arabidopsis thaliana]
gi|7270250|emb|CAB80020.1| sulfolipid biosynthesis
protein SQD1 [Arabidopsis thaliana]
gi|14190483|gb|AAK55722.1|AF380641_1
AT4g33030/F26P21_150 [Arabidopsis thaliana]
gi|21360527|gb|AAM47379.1| AT4g33030/F26P21_150
[Arabidopsis thaliana]
Length = 477
Score = 162 bits (409), Expect = 3e-39
Identities = 76/96 (79%), Positives = 89/96 (92%)
Frame = -2
Query: 514 QFKVSELANLVTKAGEKLGLDVKTMSVPNPRVELEEHYYNCKNTKLIDLGLKPHFLSDSL 335
QF V+ELA+LVTKAG KLGLDVK M+VPNPRVE EEHYYN K+TKL++LGL+PH+LSDSL
Sbjct: 380 QFSVNELASLVTKAGSKLGLDVKKMTVPNPRVEAEEHYYNAKHTKLMELGLEPHYLSDSL 439
Query: 334 LDSLLNFTVQYKDRVDTKQIMPGVSWRKVGVKTKTV 227
LDSLLNF VQ+KDRVDTKQIMP VSW+K+GVKTK++
Sbjct: 440 LDSLLNFAVQFKDRVDTKQIMPSVSWKKIGVKTKSM 475
>gb|AAO39667.1| UDP-sulfoquinovose synthase SQD1 [Spinacia oleracea]
Length = 482
Score = 156 bits (395), Expect = 1e-37
Identities = 75/98 (76%), Positives = 87/98 (88%)
Frame = -2
Query: 514 QFKVSELANLVTKAGEKLGLDVKTMSVPNPRVELEEHYYNCKNTKLIDLGLKPHFLSDSL 335
Q+ V +LA LVTKAGEKLGL+V+T+SVPNPRVE EEHYYN K+TKL +LGLKPH LSDSL
Sbjct: 385 QYSVRDLAALVTKAGEKLGLNVETISVPNPRVEAEEHYYNAKHTKLAELGLKPHLLSDSL 444
Query: 334 LDSLLNFTVQYKDRVDTKQIMPGVSWRKVGVKTKTVPA 221
LDS+LNF VQYKDRVDTKQIMP VSW+K+GVK +T+ A
Sbjct: 445 LDSVLNFAVQYKDRVDTKQIMPSVSWKKIGVKPQTLRA 482
>ref|NP_485784.1| sulfolipid biosynthesis protein [Nostoc sp. PCC 7120]
gi|25312059|pir||AB2024 sulfolipid biosynthesis protein
[imported] - Nostoc sp. (strain PCC 7120)
gi|17130834|dbj|BAB73443.1| sulfolipid biosynthesis
protein [Nostoc sp. PCC 7120]
Length = 384
Score = 122 bits (307), Expect = 2e-27
Identities = 57/88 (64%), Positives = 72/88 (81%)
Frame = -2
Query: 514 QFKVSELANLVTKAGEKLGLDVKTMSVPNPRVELEEHYYNCKNTKLIDLGLKPHFLSDSL 335
QF V +LA +V KAG LGL+V+ ++ NPR+E EEHY+N KNTKL+DLGL+PH+LSDSL
Sbjct: 296 QFSVGDLALMVKKAGNALGLNVEINNLDNPRIEKEEHYFNAKNTKLLDLGLQPHYLSDSL 355
Query: 334 LDSLLNFTVQYKDRVDTKQIMPGVSWRK 251
LDSLLNF V+Y+ RVD KQI+P VSW +
Sbjct: 356 LDSLLNFAVKYQGRVDQKQILPKVSWHR 383
>ref|NP_440474.1| sulfolipid biosynthesis protein; SqdB [Synechocystis sp. PCC 6803]
gi|7447129|pir||S75240 hypothetical protein -
Synechocystis sp. (strain PCC 6803)
gi|1652231|dbj|BAA17154.1| sulfolipid biosynthesis
protein; SqdB [Synechocystis sp. PCC 6803]
Length = 383
Score = 119 bits (299), Expect = 2e-26
Identities = 57/86 (66%), Positives = 67/86 (77%)
Frame = -2
Query: 511 FKVSELANLVTKAGEKLGLDVKTMSVPNPRVELEEHYYNCKNTKLIDLGLKPHFLSDSLL 332
F V +LA +V KAG LGL V+ + NPRVELEEHY+N NT L+DLGL+PHFLSDSLL
Sbjct: 297 FSVGDLAQMVQKAGADLGLKVEIDHLENPRVELEEHYFNAVNTNLLDLGLQPHFLSDSLL 356
Query: 331 DSLLNFTVQYKDRVDTKQIMPGVSWR 254
DSLLNF +YKDRVD K I+P V+WR
Sbjct: 357 DSLLNFATKYKDRVDQKHILPKVTWR 382
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 411,399,980
Number of Sequences: 1393205
Number of extensions: 7979724
Number of successful extensions: 18083
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 17570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18083
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16154357632
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
