Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014762A_C01 KMC014762A_c01
(480 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_173714.1| unknown protein; protein id: At1g23010.1 [Arabi... 116 1e-25
dbj|BAC42623.1| unknown protein [Arabidopsis thaliana] gi|290289... 116 1e-25
gb|AAM67200.1| spore coat protein-like protein [Arabidopsis thal... 114 5e-25
ref|NP_565008.1| spore coat protein-like protein; protein id: At... 113 1e-24
gb|AAL32542.1| spore coat protein-like protein [Arabidopsis thal... 113 1e-24
>ref|NP_173714.1| unknown protein; protein id: At1g23010.1 [Arabidopsis thaliana]
gi|25518374|pir||B86364 hypothetical protein F19G10.5 -
Arabidopsis thaliana gi|2462832|gb|AAB72167.1| similar
to Bacillus CotA [Arabidopsis thaliana]
Length = 568
Score = 116 bits (291), Expect = 1e-25
Identities = 50/62 (80%), Positives = 54/62 (86%)
Frame = -2
Query: 479 EKGWKNVFKMRPGFVTRIVVRFGYIHTNASYEFDATAEPGYVYHCHVLDHEDNAMMRPFK 300
E+GWKNVFKM PG VTRI+VRF YIHTNASY FD T EPGYVYHCH+LDHEDN MMRP K
Sbjct: 506 ERGWKNVFKMMPGHVTRILVRFSYIHTNASYPFDPTQEPGYVYHCHILDHEDNMMMRPLK 565
Query: 299 II 294
+I
Sbjct: 566 VI 567
>dbj|BAC42623.1| unknown protein [Arabidopsis thaliana] gi|29028970|gb|AAO64864.1|
At1g23010 [Arabidopsis thaliana]
Length = 581
Score = 116 bits (291), Expect = 1e-25
Identities = 50/62 (80%), Positives = 54/62 (86%)
Frame = -2
Query: 479 EKGWKNVFKMRPGFVTRIVVRFGYIHTNASYEFDATAEPGYVYHCHVLDHEDNAMMRPFK 300
E+GWKNVFKM PG VTRI+VRF YIHTNASY FD T EPGYVYHCH+LDHEDN MMRP K
Sbjct: 519 ERGWKNVFKMMPGHVTRILVRFSYIHTNASYPFDPTQEPGYVYHCHILDHEDNMMMRPLK 578
Query: 299 II 294
+I
Sbjct: 579 VI 580
>gb|AAM67200.1| spore coat protein-like protein [Arabidopsis thaliana]
Length = 563
Score = 114 bits (285), Expect = 5e-25
Identities = 48/62 (77%), Positives = 54/62 (86%)
Frame = -2
Query: 479 EKGWKNVFKMRPGFVTRIVVRFGYIHTNASYEFDATAEPGYVYHCHVLDHEDNAMMRPFK 300
E+GWKNVFKM PG VT+I+VRF YIH+N SY FDAT EPGYVYHCH+LDHEDN MMRPF
Sbjct: 501 ERGWKNVFKMMPGHVTKILVRFSYIHSNESYSFDATQEPGYVYHCHILDHEDNMMMRPFA 560
Query: 299 II 294
I+
Sbjct: 561 IV 562
>ref|NP_565008.1| spore coat protein-like protein; protein id: At1g71040.1, supported
by cDNA: 98973., supported by cDNA: gi_15292768,
supported by cDNA: gi_17064775, supported by cDNA:
gi_20259246 [Arabidopsis thaliana]
gi|15292769|gb|AAK92753.1| putative spore coat protein
[Arabidopsis thaliana] gi|20259247|gb|AAM14359.1|
putative spore coat protein [Arabidopsis thaliana]
Length = 581
Score = 113 bits (282), Expect = 1e-24
Identities = 47/62 (75%), Positives = 54/62 (86%)
Frame = -2
Query: 479 EKGWKNVFKMRPGFVTRIVVRFGYIHTNASYEFDATAEPGYVYHCHVLDHEDNAMMRPFK 300
E+GWKNVFKM PG VT+I+VRF YIH+N SY FDAT EPGYVYHCH+LDHEDN MMRPF
Sbjct: 519 ERGWKNVFKMMPGHVTKILVRFSYIHSNESYSFDATQEPGYVYHCHILDHEDNMMMRPFA 578
Query: 299 II 294
++
Sbjct: 579 MV 580
>gb|AAL32542.1| spore coat protein-like protein [Arabidopsis thaliana]
Length = 581
Score = 113 bits (282), Expect = 1e-24
Identities = 47/62 (75%), Positives = 54/62 (86%)
Frame = -2
Query: 479 EKGWKNVFKMRPGFVTRIVVRFGYIHTNASYEFDATAEPGYVYHCHVLDHEDNAMMRPFK 300
E+GWKNVFKM PG VT+I+VRF YIH+N SY FDAT EPGYVYHCH+LDHEDN MMRPF
Sbjct: 519 ERGWKNVFKMMPGHVTKILVRFSYIHSNESYSFDATQEPGYVYHCHILDHEDNMMMRPFA 578
Query: 299 II 294
++
Sbjct: 579 MV 580
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 400,749,686
Number of Sequences: 1393205
Number of extensions: 7995377
Number of successful extensions: 18639
Number of sequences better than 10.0: 86
Number of HSP's better than 10.0 without gapping: 18143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18623
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13397825772
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
