Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014757A_C01 KMC014757A_c01
(588 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM64943.1| unknown [Arabidopsis thaliana] 93 3e-18
ref|NP_565491.1| expressed protein; protein id: At2g20890.1, sup... 92 5e-18
gb|AAO72565.1| inositol phosphatase-like protein [Oryza sativa (... 89 5e-17
ref|NP_681924.1| ORF_ID:tlr1134~hypothetical protein [Thermosyne... 40 0.028
gb|ZP_00113102.1| hypothetical protein [Prochlorococcus marinus ... 37 0.24
>gb|AAM64943.1| unknown [Arabidopsis thaliana]
Length = 300
Score = 92.8 bits (229), Expect = 3e-18
Identities = 44/57 (77%), Positives = 52/57 (91%)
Frame = -1
Query: 588 KRSVDRDLDVYRNLLSRLVQAKELLREYVDREKKKREERAEPQKANEAVTKCLGHQL 418
K+SVDRDLDVYRNLLS+LVQA ELL+EYV+REKKK+EERA+ QKANE ++KCLG L
Sbjct: 233 KKSVDRDLDVYRNLLSKLVQANELLKEYVEREKKKQEERAQSQKANETISKCLGDTL 289
>ref|NP_565491.1| expressed protein; protein id: At2g20890.1, supported by cDNA:
34875., supported by cDNA: gi_17065445, supported by
cDNA: gi_20148534 [Arabidopsis thaliana]
gi|25412000|pir||F84594 hypothetical protein At2g20890
[imported] - Arabidopsis thaliana
gi|4454459|gb|AAD20906.1| expressed protein [Arabidopsis
thaliana] gi|17065446|gb|AAL32877.1| Unknown protein
[Arabidopsis thaliana] gi|20148535|gb|AAM10158.1|
unknown protein [Arabidopsis thaliana]
Length = 300
Score = 92.0 bits (227), Expect = 5e-18
Identities = 44/57 (77%), Positives = 52/57 (91%)
Frame = -1
Query: 588 KRSVDRDLDVYRNLLSRLVQAKELLREYVDREKKKREERAEPQKANEAVTKCLGHQL 418
K+SVDRDLDVYRNLLS+LVQAKELL+EYV+REKKK+ ERA+ QKANE ++KCLG L
Sbjct: 233 KKSVDRDLDVYRNLLSKLVQAKELLKEYVEREKKKQGERAQSQKANETISKCLGDTL 289
>gb|AAO72565.1| inositol phosphatase-like protein [Oryza sativa (japonica
cultivar-group)]
Length = 287
Score = 88.6 bits (218), Expect = 5e-17
Identities = 43/51 (84%), Positives = 49/51 (95%)
Frame = -1
Query: 588 KRSVDRDLDVYRNLLSRLVQAKELLREYVDREKKKREERAEPQKANEAVTK 436
KRSVDRDLDVYRN+LS+LVQAKELL+EYV+REKKKREER+E K+NEAVTK
Sbjct: 227 KRSVDRDLDVYRNILSKLVQAKELLKEYVEREKKKREERSETPKSNEAVTK 277
>ref|NP_681924.1| ORF_ID:tlr1134~hypothetical protein [Thermosynechococcus elongatus
BP-1] gi|22294857|dbj|BAC08686.1|
ORF_ID:tlr1134~hypothetical protein [Thermosynechococcus
elongatus BP-1]
Length = 222
Score = 39.7 bits (91), Expect = 0.028
Identities = 17/45 (37%), Positives = 32/45 (70%)
Frame = -1
Query: 579 VDRDLDVYRNLLSRLVQAKELLREYVDREKKKREERAEPQKANEA 445
V RDL++YR+ L ++ QA+ L++E V++E+K+R ++ A +A
Sbjct: 172 VKRDLELYRSNLDKINQARSLMKELVEQERKRRAQQTSAPPAVDA 216
>gb|ZP_00113102.1| hypothetical protein [Prochlorococcus marinus str. MIT 9313]
Length = 251
Score = 36.6 bits (83), Expect = 0.24
Identities = 17/46 (36%), Positives = 31/46 (66%)
Frame = -1
Query: 588 KRSVDRDLDVYRNLLSRLVQAKELLREYVDREKKKREERAEPQKAN 451
K V++DL++Y++ L ++ QA EL + ++ E++KRE+ E K N
Sbjct: 189 KARVEKDLNLYKSNLEKMAQAVELTEQILESERRKREQN-ESAKLN 233
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 507,911,826
Number of Sequences: 1393205
Number of extensions: 11228149
Number of successful extensions: 31418
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 29950
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31363
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22283372436
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
