Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014736A_C01 KMC014736A_c01
(535 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_178161.1| putative glycerol kinase; protein id: At1g80460... 199 2e-50
emb|CAB55410.1| zhb0002.1 [Oryza sativa (indica cultivar-group)] 145 4e-34
ref|ZP_00126551.1| hypothetical protein [Pseudomonas syringae pv... 119 3e-26
ref|NP_793929.1| glycerol kinase [Pseudomonas syringae pv. tomat... 118 4e-26
ref|ZP_00087828.1| hypothetical protein [Pseudomonas fluorescens... 118 5e-26
>ref|NP_178161.1| putative glycerol kinase; protein id: At1g80460.1 [Arabidopsis
thaliana] gi|25287497|pir||D96836 probable glycerol
kinase, 69575-71670 [imported] - Arabidopsis thaliana
gi|6730733|gb|AAF27123.1|AC018849_11 putative glycerol
kinase; 69575-71670 [Arabidopsis thaliana]
Length = 522
Score = 199 bits (505), Expect = 2e-50
Identities = 101/137 (73%), Positives = 112/137 (81%), Gaps = 4/137 (2%)
Frame = -3
Query: 533 HIARAVLESMCFQVRDVLDSMQKDSSEESKTD----EFLLRVDGGATANNLLMQIQADLM 366
HIARAVLESMCFQV+DVLDSM KD+ E+ + EFLLRVDGGATANNLLMQIQADLM
Sbjct: 386 HIARAVLESMCFQVKDVLDSMNKDAGEKGSLNNGKGEFLLRVDGGATANNLLMQIQADLM 445
Query: 365 GSSVIRPADIETTALGAAYAAGLGAGIWSEDFLFDSKEKMKNANVFRPTMVEEVRKKKVD 186
GS V+RP DIETTALGAAYAAGL G W E +F+S EK KN+ VFRP M E +RKKKV
Sbjct: 446 GSPVVRPVDIETTALGAAYAAGLAVGFWKEADIFESGEKAKNSKVFRPAMEEGIRKKKVA 505
Query: 185 SWCKAVSRTFDLADLTL 135
SWCKAV RTFDLADL++
Sbjct: 506 SWCKAVERTFDLADLSI 522
>emb|CAB55410.1| zhb0002.1 [Oryza sativa (indica cultivar-group)]
Length = 772
Score = 145 bits (365), Expect = 4e-34
Identities = 77/112 (68%), Positives = 87/112 (76%), Gaps = 4/112 (3%)
Frame = -3
Query: 533 HIARAVLESMCFQVRDVLDSMQKDSSE----ESKTDEFLLRVDGGATANNLLMQIQADLM 366
HIARAVLESMCFQV DVL SM KD+ E +S EFLLRVDGGAT NNLLMQIQADL+
Sbjct: 291 HIARAVLESMCFQVNDVLSSMHKDAGEAGEVKSAEGEFLLRVDGGATVNNLLMQIQADLL 350
Query: 365 GSSVIRPADIETTALGAAYAAGLGAGIWSEDFLFDSKEKMKNANVFRPTMVE 210
GS V+RPADIETTALGAAYAAGL G+WS++ +F K +N VFRP + E
Sbjct: 351 GSPVVRPADIETTALGAAYAAGLAVGVWSKEQIFAGLHK-ENTTVFRPKLDE 401
>ref|ZP_00126551.1| hypothetical protein [Pseudomonas syringae pv. syringae B728a]
Length = 501
Score = 119 bits (297), Expect = 3e-26
Identities = 68/127 (53%), Positives = 82/127 (64%)
Frame = -3
Query: 533 HIARAVLESMCFQVRDVLDSMQKDSSEESKTDEFLLRVDGGATANNLLMQIQADLMGSSV 354
HI RA LES+ +Q RDVLD+MQ+DS E K+ LRVDGGA ANN LMQ QAD++G+ V
Sbjct: 373 HIIRAALESIAYQTRDVLDAMQQDSGERLKS----LRVDGGAVANNFLMQFQADILGTHV 428
Query: 353 IRPADIETTALGAAYAAGLGAGIWSEDFLFDSKEKMKNANVFRPTMVEEVRKKKVDSWCK 174
RP ETTALGAA+ AGL G WS L + + K VF P+ E R+K W K
Sbjct: 429 ERPQMRETTALGAAFLAGLAIGFWSS--LDELRNKAVIERVFEPSCEEAHREKLYAGWQK 486
Query: 173 AVSRTFD 153
AV+RT D
Sbjct: 487 AVARTRD 493
>ref|NP_793929.1| glycerol kinase [Pseudomonas syringae pv. tomato str. DC3000]
gi|28854561|gb|AAO57624.1| glycerol kinase [Pseudomonas
syringae pv. tomato str. DC3000]
Length = 501
Score = 118 bits (296), Expect = 4e-26
Identities = 68/127 (53%), Positives = 81/127 (63%)
Frame = -3
Query: 533 HIARAVLESMCFQVRDVLDSMQKDSSEESKTDEFLLRVDGGATANNLLMQIQADLMGSSV 354
HI RA LES+ +Q RDVLD+MQ+DS E K+ LRVDGGA ANN LMQ QAD++G+ V
Sbjct: 373 HIIRAALESIAYQTRDVLDAMQQDSGERLKS----LRVDGGAVANNFLMQFQADILGTHV 428
Query: 353 IRPADIETTALGAAYAAGLGAGIWSEDFLFDSKEKMKNANVFRPTMVEEVRKKKVDSWCK 174
RP ETTALGAA+ AGL G WS L + + K VF P E R+K W K
Sbjct: 429 ERPQMRETTALGAAFLAGLAIGFWSS--LDELRNKAVIERVFEPACEEAHREKLYAGWQK 486
Query: 173 AVSRTFD 153
AV+RT D
Sbjct: 487 AVARTRD 493
>ref|ZP_00087828.1| hypothetical protein [Pseudomonas fluorescens PfO-1]
Length = 500
Score = 118 bits (295), Expect = 5e-26
Identities = 68/129 (52%), Positives = 81/129 (62%)
Frame = -3
Query: 533 HIARAVLESMCFQVRDVLDSMQKDSSEESKTDEFLLRVDGGATANNLLMQIQADLMGSSV 354
HI RA LES+ +Q RDVLD+MQ+DS E K LRVDGGA ANN LMQ QAD++G+ V
Sbjct: 373 HIIRAALESIAYQTRDVLDAMQQDSGERLKA----LRVDGGAVANNFLMQFQADILGTQV 428
Query: 353 IRPADIETTALGAAYAAGLGAGIWSEDFLFDSKEKMKNANVFRPTMVEEVRKKKVDSWCK 174
RP ETTALGAAY AGL G W L + + K F P++ E ++K W K
Sbjct: 429 ERPKMRETTALGAAYLAGLACGFWGS--LEELRGKAVIEREFEPSLDEVEKEKLYKGWKK 486
Query: 173 AVSRTFDLA 147
AVSRT D A
Sbjct: 487 AVSRTRDWA 495
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 426,516,108
Number of Sequences: 1393205
Number of extensions: 9013353
Number of successful extensions: 25222
Number of sequences better than 10.0: 313
Number of HSP's better than 10.0 without gapping: 24169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24967
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
