Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014727A_C01 KMC014727A_c01
(601 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_180433.1| hypothetical protein; protein id: At2g28650.1 [... 109 2e-23
ref|NP_200781.1| putative protein; protein id: At5g59730.1, supp... 98 9e-20
gb|AAN31913.1| unknown protein [Arabidopsis thaliana] 98 9e-20
pir||E86212 hypothetical protein [imported] - Arabidopsis thalia... 97 1e-19
ref|NP_191075.2| putative protein; protein id: At3g55150.1, supp... 82 5e-15
>ref|NP_180433.1| hypothetical protein; protein id: At2g28650.1 [Arabidopsis
thaliana] gi|25308577|pir||E84687 hypothetical protein
At2g28650 [imported] - Arabidopsis thaliana
gi|4580392|gb|AAD24370.1| hypothetical protein
[Arabidopsis thaliana] gi|26451869|dbj|BAC43027.1|
unknown protein [Arabidopsis thaliana]
Length = 573
Score = 109 bits (273), Expect = 2e-23
Identities = 54/128 (42%), Positives = 82/128 (63%)
Frame = -2
Query: 600 DWLANHKLKVKEYVSKYERVAWNKVVAALPENPTAAGEVTARACFVAFNAAFR*ECRKQS 421
DW+ H+ KVK+YV+K+E + W +++ +L ++ T +TA F+ F ++Q+
Sbjct: 444 DWVKKHEAKVKKYVAKFEEIVWGEMMTSLSDDVT----MTAEEGIKRFSDGFEEAYKRQT 499
Query: 420 SWVVSDPKLREEIKGSIGSMLVLKYSDFFERNRVGLESGMGILPGEIGHYLNDILHGSED 241
W+V D KLR+EIK S+G M++ +YS F ERNRV L +G P +IG+YL+D+ GS
Sbjct: 500 GWIVPDSKLRDEIKRSVGMMIIPRYSGFCERNRVRLLENVGFDPEDIGNYLSDLYFGSGG 559
Query: 240 SGSLSSPH 217
SGS SS H
Sbjct: 560 SGSGSSVH 567
>ref|NP_200781.1| putative protein; protein id: At5g59730.1, supported by cDNA:
gi_13430533, supported by cDNA: gi_14334437, supported
by cDNA: gi_15010739, supported by cDNA: gi_16974428,
supported by cDNA: gi_17104762 [Arabidopsis thaliana]
gi|9758838|dbj|BAB09510.1|
gb|AAD24370.1~gene_id:MTH12.6~strong similarity to
unknown protein [Arabidopsis thaliana]
gi|13430534|gb|AAK25889.1|AF360179_1 unknown protein
[Arabidopsis thaliana] gi|14334438|gb|AAK59417.1|
unknown protein [Arabidopsis thaliana]
gi|15010740|gb|AAK74029.1| AT5g59730/mth12_130
[Arabidopsis thaliana] gi|16974429|gb|AAL31140.1|
AT5g59730/mth12_130 [Arabidopsis thaliana]
gi|17104763|gb|AAL34270.1| unknown protein [Arabidopsis
thaliana]
Length = 634
Score = 97.8 bits (242), Expect = 9e-20
Identities = 53/133 (39%), Positives = 77/133 (57%), Gaps = 7/133 (5%)
Frame = -2
Query: 600 DWLANHKLKVKEYVSKYERVAWNKVVAALPENPT-AAGEVTARACFVAFNAAFR*ECRKQ 424
DW+ H+ KVK Y K+E++AW KV+ LPE PT A+ FN F RKQ
Sbjct: 475 DWVFRHEEKVKLYADKFEKLAWGKVLDLLPEIPTDEISPEEAKVLVARFNDEFETSYRKQ 534
Query: 423 SSWVVSDPKLREEIKGSIGSMLVLKYSDFFERNRVGL------ESGMGILPGEIGHYLND 262
+SWV+ DPKLR++IK ++ L+L ++F+ NR E+ P +IG+YL+D
Sbjct: 535 TSWVIPDPKLRDQIKITLSQKLMLVCTEFYRMNRFAYGMVGDNEAISRYTPEDIGNYLSD 594
Query: 261 ILHGSEDSGSLSS 223
+ GS SGS+S+
Sbjct: 595 LYFGSRGSGSVST 607
>gb|AAN31913.1| unknown protein [Arabidopsis thaliana]
Length = 634
Score = 97.8 bits (242), Expect = 9e-20
Identities = 53/133 (39%), Positives = 77/133 (57%), Gaps = 7/133 (5%)
Frame = -2
Query: 600 DWLANHKLKVKEYVSKYERVAWNKVVAALPENPT-AAGEVTARACFVAFNAAFR*ECRKQ 424
DW+ H+ KVK Y K+E++AW KV+ LPE PT A+ FN F RKQ
Sbjct: 475 DWVFRHEEKVKLYADKFEKLAWGKVLDLLPEIPTDEISPEEAKVLVARFNDEFETSYRKQ 534
Query: 423 SSWVVSDPKLREEIKGSIGSMLVLKYSDFFERNRVGL------ESGMGILPGEIGHYLND 262
+SWV+ DPKLR++IK ++ L+L ++F+ NR E+ P +IG+YL+D
Sbjct: 535 TSWVIPDPKLRDQIKITLSQKLMLVCTEFYRMNRFAYGMVGDNEAISRYTPEDIGNYLSD 594
Query: 261 ILHGSEDSGSLSS 223
+ GS SGS+S+
Sbjct: 595 LYFGSRGSGSVST 607
>pir||E86212 hypothetical protein [imported] - Arabidopsis thaliana
gi|8439895|gb|AAF75081.1|AC007583_17 It contains a
interferon alpha/beta domain PF|00143. EST gb|N96176
comes from this gene. [Arabidopsis thaliana]
Length = 615
Score = 97.4 bits (241), Expect = 1e-19
Identities = 49/130 (37%), Positives = 78/130 (59%)
Frame = -2
Query: 600 DWLANHKLKVKEYVSKYERVAWNKVVAALPENPTAAGEVTARACFVAFNAAFR*ECRKQS 421
DW+ANH++KV +Y+ KYE++AW V+A+LP + TA E A FN AF +K
Sbjct: 477 DWVANHEVKVNQYLEKYEKMAWGDVIASLPGDSTAGTE--AEESLRRFNEAFEEAYKKHK 534
Query: 420 SWVVSDPKLREEIKGSIGSMLVLKYSDFFERNRVGLESGMGILPGEIGHYLNDILHGSED 241
+WVV DP LR+EI+ SI L+ Y+ F++++ VG + + P ++ +Y+ D+ G
Sbjct: 535 TWVVPDPNLRDEIQASIARKLMPGYTGFYKKHPVGSCNIVRFTPEDLNNYITDLYVGLGR 594
Query: 240 SGSLSSPHRY 211
S +S +Y
Sbjct: 595 SVPVSKTKKY 604
>ref|NP_191075.2| putative protein; protein id: At3g55150.1, supported by cDNA:
gi_18377617, supported by cDNA: gi_20465378 [Arabidopsis
thaliana] gi|18377618|gb|AAL66959.1| unknown protein
[Arabidopsis thaliana] gi|20465379|gb|AAM20093.1|
unknown protein [Arabidopsis thaliana]
Length = 636
Score = 82.0 bits (201), Expect = 5e-15
Identities = 49/131 (37%), Positives = 70/131 (53%), Gaps = 6/131 (4%)
Frame = -2
Query: 600 DWLANHKLKVKEYVSKYERVAWNKVVAALPENPTAAGEVTARACFVAFNAAFR*ECRKQS 421
DWL H+ K+ Y YE AW+ V +LPE PT A+ F F+ AF KQS
Sbjct: 488 DWLNKHEDKLCAYAGNYEIAAWSNVFMSLPEEPTDLSPEEAKIYFRRFHTAFEEAYMKQS 547
Query: 420 SWVVSDPKLREEIKGSIGSMLVLKYSDFFER--NRVGLESGMGIL----PGEIGHYLNDI 259
S VV + KLR+E+K SI LV +Y +F+ + +G E + IL P + +Y++D+
Sbjct: 548 SRVVPNAKLRDELKVSIAKKLVPEYREFYRKYLPMLGQERNIEILVRFKPDNLENYISDL 607
Query: 258 LHGSEDSGSLS 226
HG+ S S
Sbjct: 608 FHGTPIHASSS 618
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 571,699,537
Number of Sequences: 1393205
Number of extensions: 13877190
Number of successful extensions: 155487
Number of sequences better than 10.0: 823
Number of HSP's better than 10.0 without gapping: 66940
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126760
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
