Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014726A_C01 KMC014726A_c01
(625 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM00218.1|AF362990_1 beta-D-xylosidase [Prunus persica] 143 2e-33
pir||D86156 hypothetical protein T14P4.8 - Arabidopsis thaliana ... 136 3e-31
ref|NP_563659.1| glycosyl hydrolase family 3; protein id: At1g02... 136 3e-31
ref|NP_199747.1| glycosyl hydrolase family 3; protein id: At5g49... 115 6e-25
gb|AAK38481.1| alpha-L-arabinofuranosidase/beta-D-xylosidase iso... 85 9e-16
>gb|AAM00218.1|AF362990_1 beta-D-xylosidase [Prunus persica]
Length = 461
Score = 143 bits (361), Expect = 2e-33
Identities = 64/102 (62%), Positives = 82/102 (79%), Gaps = 1/102 (0%)
Frame = -3
Query: 623 HAKCGALK-MGFHVDVKNEGSMDGTHTLLIFSTPPPGKWSASKQLVSFHKTYVPAGSKQR 447
H C AL + HVDVKN GSMDGTHTLL+F++PP GKW++SKQL+ FHK ++ GS++R
Sbjct: 353 HPDCNALSPLDVHVDVKNTGSMDGTHTLLVFTSPPDGKWASSKQLMGFHKIHIATGSEKR 412
Query: 446 VNVGVHVCKHLSVVDENGIRRIPMGDHELHIGDVKHTISVQT 321
V + VHVCKHLSVVD GIRRIP+G+H+L IGD+ H +S+QT
Sbjct: 413 VRIAVHVCKHLSVVDRFGIRRIPLGEHKLQIGDLSHHVSLQT 454
>pir||D86156 hypothetical protein T14P4.8 - Arabidopsis thaliana
gi|9972374|gb|AAG10624.1|AC022521_2 Similar to
xylosidase [Arabidopsis thaliana]
Length = 763
Score = 136 bits (342), Expect = 3e-31
Identities = 59/100 (59%), Positives = 76/100 (76%)
Frame = -3
Query: 623 HAKCGALKMGFHVDVKNEGSMDGTHTLLIFSTPPPGKWSASKQLVSFHKTYVPAGSKQRV 444
HA+C L +G HV+V N GS DGTHT+L+FS PP G+W+ KQLV+F + +V G K+RV
Sbjct: 655 HARCDRLSLGVHVEVTNVGSRDGTHTMLVFSAPPGGEWAPKKQLVAFERVHVAVGEKKRV 714
Query: 443 NVGVHVCKHLSVVDENGIRRIPMGDHELHIGDVKHTISVQ 324
V +HVCK+LSVVD G RRIP+GDH +HIGD HT+S+Q
Sbjct: 715 QVNIHVCKYLSVVDRAGNRRIPIGDHGIHIGDESHTVSLQ 754
>ref|NP_563659.1| glycosyl hydrolase family 3; protein id: At1g02640.1, supported by
cDNA: gi_14194120 [Arabidopsis thaliana]
gi|14194121|gb|AAK56255.1|AF367266_1 At1g02640/T14P4_11
[Arabidopsis thaliana] gi|23506063|gb|AAN28891.1|
At1g02640/T14P4_11 [Arabidopsis thaliana]
Length = 768
Score = 136 bits (342), Expect = 3e-31
Identities = 59/100 (59%), Positives = 76/100 (76%)
Frame = -3
Query: 623 HAKCGALKMGFHVDVKNEGSMDGTHTLLIFSTPPPGKWSASKQLVSFHKTYVPAGSKQRV 444
HA+C L +G HV+V N GS DGTHT+L+FS PP G+W+ KQLV+F + +V G K+RV
Sbjct: 660 HARCDRLSLGVHVEVTNVGSRDGTHTMLVFSAPPGGEWAPKKQLVAFERVHVAVGEKKRV 719
Query: 443 NVGVHVCKHLSVVDENGIRRIPMGDHELHIGDVKHTISVQ 324
V +HVCK+LSVVD G RRIP+GDH +HIGD HT+S+Q
Sbjct: 720 QVNIHVCKYLSVVDRAGNRRIPIGDHGIHIGDESHTVSLQ 759
>ref|NP_199747.1| glycosyl hydrolase family 3; protein id: At5g49360.1 [Arabidopsis
thaliana] gi|9759419|dbj|BAB09906.1| xylosidase
[Arabidopsis thaliana] gi|21539545|gb|AAM53325.1|
xylosidase [Arabidopsis thaliana]
Length = 774
Score = 115 bits (287), Expect = 6e-25
Identities = 57/104 (54%), Positives = 70/104 (66%), Gaps = 4/104 (3%)
Frame = -3
Query: 623 HAKCGAL-KMGFHVDVKNEGSMDGTHTLLIFSTPPPGK---WSASKQLVSFHKTYVPAGS 456
H C + KM HV+V N G DGTHT+ +F+ PP +KQL++F K +V AG+
Sbjct: 668 HTNCNSFPKMPLHVEVSNTGEFDGTHTVFVFAEPPINGIKGLGVNKQLIAFEKVHVMAGA 727
Query: 455 KQRVNVGVHVCKHLSVVDENGIRRIPMGDHELHIGDVKHTISVQ 324
KQ V V V CKHL VVDE G RRIPMG+H+LHIGD+KHTI VQ
Sbjct: 728 KQTVQVDVDACKHLGVVDEYGKRRIPMGEHKLHIGDLKHTILVQ 771
>gb|AAK38481.1| alpha-L-arabinofuranosidase/beta-D-xylosidase isoenzyme ARA-I
[Hordeum vulgare]
Length = 777
Score = 84.7 bits (208), Expect = 9e-16
Identities = 40/97 (41%), Positives = 59/97 (60%)
Frame = -3
Query: 614 CGALKMGFHVDVKNEGSMDGTHTLLIFSTPPPGKWSASKQLVSFHKTYVPAGSKQRVNVG 435
C L + + V+N G + G H++L+FS+PPP + +K LV F K + G V
Sbjct: 680 CDDLALDVKLQVRNAGEVAGAHSVLLFSSPPPAHNAPAKHLVGFEKVSLAPGEAGTVAFR 739
Query: 434 VHVCKHLSVVDENGIRRIPMGDHELHIGDVKHTISVQ 324
V VC+ LSVVDE G R++ +G H LH GD+KHT+ ++
Sbjct: 740 VDVCRDLSVVDELGGRKVALGGHTLHDGDLKHTVELR 776
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 568,863,793
Number of Sequences: 1393205
Number of extensions: 12913205
Number of successful extensions: 42343
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 35566
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41818
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25301904073
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
