Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014722A_C01 KMC014722A_c01
(612 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566728.1| expressed protein; protein id: At3g23400.1, sup... 229 3e-59
gb|AAM64485.1| unknown [Arabidopsis thaliana] 227 1e-58
ref|NP_440566.1| fibrillin [Synechocystis sp. PCC 6803] gi|74693... 51 1e-05
gb|AAD38023.1|AF148219_1 fibrillin [Nostoc sp. PCC 8009] 51 1e-05
gb|ZP_00108105.1| hypothetical protein [Nostoc punctiforme] 51 1e-05
>ref|NP_566728.1| expressed protein; protein id: At3g23400.1, supported by cDNA:
29542. [Arabidopsis thaliana]
gi|11994325|dbj|BAB02284.1| gene_id:MLM24.13~unknown
protein [Arabidopsis thaliana]
Length = 284
Score = 229 bits (583), Expect = 3e-59
Identities = 107/138 (77%), Positives = 124/138 (89%)
Frame = -1
Query: 612 FSSRTLGGSRPGPPTGRLLPITLGQVFQRIDVLSKDFDNIVELQLGAPWPLPPLEATATL 433
FSSR+LGGSRPG PTGRL+P+TLGQVFQRIDV SKDFDNI E++LGAPWP PPLEATATL
Sbjct: 147 FSSRSLGGSRPGLPTGRLIPVTLGQVFQRIDVFSKDFDNIAEVELGAPWPFPPLEATATL 206
Query: 432 AHKFELIGSSKIKIKFEKTTVKTLGNFSQLPPLELPRIPDALRPSSNRGSGEFEVTFLDS 253
AHKFEL+G+ KIKI FEKTTVKT GN SQ+PP ++PR+PD+ RPSSN G+G+FEVT++D
Sbjct: 207 AHKFELLGTCKIKITFEKTTVKTSGNLSQIPPFDIPRLPDSFRPSSNPGTGDFEVTYVDD 266
Query: 252 DTRITRGDKGELRVFVIA 199
RITRGD+GELRVFVIA
Sbjct: 267 TMRITRGDRGELRVFVIA 284
>gb|AAM64485.1| unknown [Arabidopsis thaliana]
Length = 284
Score = 227 bits (578), Expect = 1e-58
Identities = 106/138 (76%), Positives = 124/138 (89%)
Frame = -1
Query: 612 FSSRTLGGSRPGPPTGRLLPITLGQVFQRIDVLSKDFDNIVELQLGAPWPLPPLEATATL 433
FSSR+LGGSRPG PTGRL+P+TLGQVFQRI+V SKDFDNI E++LGAPWP PPLEATATL
Sbjct: 147 FSSRSLGGSRPGLPTGRLIPVTLGQVFQRINVFSKDFDNIAEVELGAPWPFPPLEATATL 206
Query: 432 AHKFELIGSSKIKIKFEKTTVKTLGNFSQLPPLELPRIPDALRPSSNRGSGEFEVTFLDS 253
AHKFEL+G+ KIKI FEKTTVKT GN SQ+PP ++PR+PD+ RPSSN G+G+FEVT++D
Sbjct: 207 AHKFELLGTCKIKITFEKTTVKTSGNLSQIPPFDIPRLPDSFRPSSNPGTGDFEVTYVDD 266
Query: 252 DTRITRGDKGELRVFVIA 199
RITRGD+GELRVFVIA
Sbjct: 267 TMRITRGDRGELRVFVIA 284
>ref|NP_440566.1| fibrillin [Synechocystis sp. PCC 6803] gi|7469320|pir||S75332
fibrillin - Synechocystis sp. (strain PCC 6803)
gi|1652323|dbj|BAA17246.1| fibrillin [Synechocystis sp.
PCC 6803]
Length = 202
Score = 51.2 bits (121), Expect = 1e-05
Identities = 35/130 (26%), Positives = 64/130 (48%), Gaps = 8/130 (6%)
Frame = -1
Query: 564 RLLPITLGQVFQRIDVLSKDFDNIVELQLGAPWPLPPLEATATLAHKFELIGSSKIKIKF 385
RL + LGQ++Q IDV N+ E++ +P LE+ ++ F + +I++KF
Sbjct: 78 RLPLLQLGQIYQYIDVAGSRVVNLAEIE-----GIPFLESLVSVVASFIPVSDKRIEVKF 132
Query: 384 EKTTVKTLGNFSQLPPLELPR--------IPDALRPSSNRGSGEFEVTFLDSDTRITRGD 229
E++ + + PL+ + +P + E+T+LD D RI+RG+
Sbjct: 133 ERSILGLQKILNYQSPLKFIQQISTGKRFLPADFNLPGRDNAAWLEITYLDEDLRISRGN 192
Query: 228 KGELRVFVIA 199
+G VF++A
Sbjct: 193 EG--NVFILA 200
>gb|AAD38023.1|AF148219_1 fibrillin [Nostoc sp. PCC 8009]
Length = 194
Score = 51.2 bits (121), Expect = 1e-05
Identities = 37/124 (29%), Positives = 64/124 (50%), Gaps = 8/124 (6%)
Frame = -1
Query: 546 LGQVFQRIDVLSKDFDNIVELQLGAPWPLPPLEATATLAHKFELIGSSKIKIKFEKTTV- 370
LGQ++Q I V + NI E+ + LP LE ++ KFE + ++++KFE++ +
Sbjct: 76 LGQIYQCIRVETTSVYNIAEI-----YGLPYLEGLISVRAKFEPVSGRRVQVKFERSIIG 130
Query: 369 -------KTLGNFSQLPPLELPRIPDALRPSSNRGSGEFEVTFLDSDTRITRGDKGELRV 211
++ NF Q I SS+ G ++T++D+D RI RG++G V
Sbjct: 131 LKSLIGYTSVENFIQQIETGKKFIAIDFPISSDTQQGWLDITYIDNDLRIGRGNEGS--V 188
Query: 210 FVIA 199
FV++
Sbjct: 189 FVLS 192
>gb|ZP_00108105.1| hypothetical protein [Nostoc punctiforme]
Length = 194
Score = 50.8 bits (120), Expect = 1e-05
Identities = 34/124 (27%), Positives = 65/124 (52%), Gaps = 8/124 (6%)
Frame = -1
Query: 546 LGQVFQRIDVLSKDFDNIVELQLGAPWPLPPLEATATLAHKFELIGSSKIKIKFEKTTVK 367
LGQ++Q I V + NI E+ + LP LE ++A KFE + ++++KFE++ +
Sbjct: 76 LGQIYQCIRVETTSVYNIAEI-----YGLPYLEGLVSVAAKFEPVSGRRVQVKFERSIIG 130
Query: 366 TLGNFSQLPPLELPRIPDALRP--------SSNRGSGEFEVTFLDSDTRITRGDKGELRV 211
P+ + +A + S++ G ++T++D+D RI RG++G V
Sbjct: 131 LQRLIEYNSPVTFIQQIEAGKKFAGIDFAIKSDKQQGWLDITYIDNDLRIGRGNEGS--V 188
Query: 210 FVIA 199
F+++
Sbjct: 189 FILS 192
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 517,323,015
Number of Sequences: 1393205
Number of extensions: 11037550
Number of successful extensions: 31039
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 29840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31018
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24568846532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
