Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014721A_C01 KMC014721A_c01
(560 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_192249.1| putative GH3-like protein; protein id: At4g0340... 140 1e-32
ref|NP_566071.1| putative auxin-responsive protein; protein id: ... 102 2e-21
pir||A84902 auxin-regulated protein GH3 homolog At2g46370 - Arab... 102 2e-21
gb|AAK92798.1| putative auxin-responsive protein [Arabidopsis th... 99 3e-20
dbj|BAA96221.1| unnamed protein product [Oryza sativa (japonica ... 98 6e-20
>ref|NP_192249.1| putative GH3-like protein; protein id: At4g03400.1, supported by
cDNA: gi_16649142 [Arabidopsis thaliana]
gi|25345297|pir||B85043 probable GH3-like protein
[imported] - Arabidopsis thaliana
gi|4206194|gb|AAD11582.1|AAD11582 GH3-like protein
[Arabidopsis thaliana] gi|4262168|gb|AAD14468.1|
putative GH3-like protein [Arabidopsis thaliana]
gi|7270210|emb|CAB77825.1| putative GH3-like protein
[Arabidopsis thaliana] gi|16649143|gb|AAL24423.1|
GH3-like protein [Arabidopsis thaliana]
gi|23197706|gb|AAN15380.1| GH3-like protein [Arabidopsis
thaliana]
Length = 591
Score = 140 bits (352), Expect = 1e-32
Identities = 66/101 (65%), Positives = 79/101 (77%)
Frame = -1
Query: 560 GWYVIFWEMKGETEEKVLEACCREMDAAFVDHGYVVSRKTCSIGPLELRIVESGTFKKIL 381
G YVI+WE++GE ++K LE CCREMD AFVD+GYVVSR+ SIGPLELR+VE GTF K+
Sbjct: 490 GHYVIYWEIRGEADDKALEECCREMDTAFVDYGYVVSRRMNSIGPLELRVVERGTFGKVA 549
Query: 380 DCYVASGAGLGQFKTPRCTNNPVLLNILNACTIKTFRSTAY 258
+ V GL QFKTPRCT N V+L+ILN TIK FRS+AY
Sbjct: 550 ERCVGKCGGLNQFKTPRCTTNSVMLDILNDSTIKRFRSSAY 590
>ref|NP_566071.1| putative auxin-responsive protein; protein id: At2g46370.1,
supported by cDNA: gi_15292854 [Arabidopsis thaliana]
gi|9255891|gb|AAF86349.1|AF279129_1 FIN219 [Arabidopsis
thaliana] gi|20197821|gb|AAD23040.2| putative
auxin-responsive protein [Arabidopsis thaliana]
gi|23297477|gb|AAN12979.1| putative auxin-responsive
protein [Arabidopsis thaliana]
Length = 575
Score = 102 bits (255), Expect = 2e-21
Identities = 51/103 (49%), Positives = 68/103 (65%), Gaps = 2/103 (1%)
Frame = -1
Query: 560 GWYVIFWEMKGETEEKVLEACCREMDAAFVDHGYVVSRKTCSIGPLELRIVESGTFKKIL 381
G Y IFWE+ GET E VL+ CC +D AF+D GYV SRK +IG LELR+V GTF+KI
Sbjct: 473 GHYAIFWEISGETNEDVLQDCCNCLDRAFIDAGYVSSRKCKTIGALELRVVAKGTFRKIQ 532
Query: 380 DCYVASGAGLGQFKTPRCT--NNPVLLNILNACTIKTFRSTAY 258
+ ++ G+ GQFK PRC +N +L IL + ++ STA+
Sbjct: 533 EHFLGLGSSAGQFKMPRCVKPSNAKVLQILCENVVSSYFSTAF 575
>pir||A84902 auxin-regulated protein GH3 homolog At2g46370 - Arabidopsis
thaliana
Length = 576
Score = 102 bits (255), Expect = 2e-21
Identities = 51/103 (49%), Positives = 68/103 (65%), Gaps = 2/103 (1%)
Frame = -1
Query: 560 GWYVIFWEMKGETEEKVLEACCREMDAAFVDHGYVVSRKTCSIGPLELRIVESGTFKKIL 381
G Y IFWE+ GET E VL+ CC +D AF+D GYV SRK +IG LELR+V GTF+KI
Sbjct: 474 GHYAIFWEISGETNEDVLQDCCNCLDRAFIDAGYVSSRKCKTIGALELRVVAKGTFRKIQ 533
Query: 380 DCYVASGAGLGQFKTPRCT--NNPVLLNILNACTIKTFRSTAY 258
+ ++ G+ GQFK PRC +N +L IL + ++ STA+
Sbjct: 534 EHFLGLGSSAGQFKMPRCVKPSNAKVLQILCENVVSSYFSTAF 576
>gb|AAK92798.1| putative auxin-responsive protein [Arabidopsis thaliana]
Length = 575
Score = 99.4 bits (246), Expect = 3e-20
Identities = 50/103 (48%), Positives = 67/103 (64%), Gaps = 2/103 (1%)
Frame = -1
Query: 560 GWYVIFWEMKGETEEKVLEACCREMDAAFVDHGYVVSRKTCSIGPLELRIVESGTFKKIL 381
G IFWE+ GET E VL+ CC +D AF+D GYV SRK +IG LELR+V GTF+KI
Sbjct: 473 GHNAIFWEISGETNEDVLQDCCNCLDRAFIDAGYVSSRKCKTIGALELRVVAKGTFRKIQ 532
Query: 380 DCYVASGAGLGQFKTPRCT--NNPVLLNILNACTIKTFRSTAY 258
+ ++ G+ GQFK PRC +N +L IL + ++ STA+
Sbjct: 533 EHFLGLGSSAGQFKMPRCVKPSNAKVLQILCENVVSSYFSTAF 575
>dbj|BAA96221.1| unnamed protein product [Oryza sativa (japonica cultivar-group)]
Length = 591
Score = 98.2 bits (243), Expect = 6e-20
Identities = 50/107 (46%), Positives = 71/107 (65%), Gaps = 6/107 (5%)
Frame = -1
Query: 560 GWYVIFWEMKGE----TEEKVLEACCREMDAAFVDHGYVVSRKTCSIGPLELRIVESGTF 393
G YV+F E+ + V++ACC E+D AF D GYV SRK+ +I PLELR+++ GTF
Sbjct: 484 GHYVVFLELNAADPAAVDGDVMQACCDELDRAFADAGYVGSRKSGAIAPLELRVLQRGTF 543
Query: 392 KKILDCYVASGAGLGQFKTPRCT--NNPVLLNILNACTIKTFRSTAY 258
+K+L Y++ GA + QFK+PRC +N +L IL CT+ F S+AY
Sbjct: 544 QKVLRHYLSLGAPVSQFKSPRCVSRSNSGVLQILAGCTVNVFFSSAY 590
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 503,293,944
Number of Sequences: 1393205
Number of extensions: 11012766
Number of successful extensions: 23547
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 22952
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23516
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20095422690
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
